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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggacaaatatatgtttctttatcaatttgaccgctgactaactgggacacttaattgactaaaagactgctataacgtactgaatgttaatgtgtggatattcagcaaacattttattttcttccttagcgttaaatattcagttaccagagatttgtttcttcaaaatatatagGCTCGTGAATTCGCGAAGGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTTTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA

Basic information

species Arabidopsis thaliana
transcript AT1G47560.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47560.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 13
gtgaggacaaatatatgtttctttatcaatttgaccgctgactaactgggacacttaattgactaaaagactgctataacgtactgaatgttaatgtgtggatattcagcaaacattttattttcttccttagcgttaaatattcagttaccagagatttgtttcttcaaaatatatagGCTCGTGAATTCGCGAAGGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTTTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
                                                                     |||  |   | || || ||  |||||   | ||| ||  ||   || ||||     |||  ||   || |||||   ||  |   |  ||   || |  |  || ||||||||||||| || || || ||||||||||| || || |||| |||| ||||||| ||||| ||||| ||||  ||||| || ||| |||| |||   ||||
---------------------------------------------------------------------act--tgataggtccttaa--ttaattactagatcttgtgc---cagtttagaaa-ttcagtatgtttgaatatgtggtgtctgaaagttc--ttttatatcatctatagGCTCGTGAGTTTGCAAATGAGCTTCGTGCTAGTACCAAAGCATCAAGAAATCCAACTGTCTGGCTTGAAGCTTCTACAGGCTCTGGTCAAAATATGAACA

upper sequence: AT1G47560.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: EFJ29370 (Selaginella moellendorffii), 3'ss of exon 13
gtgaggacaaatatatgtttctttatcaatttgaccgctgactaactgggacacttaattgactaaaagactgctataacgtactgaatgttaatgtgtggatattcagcaaacattttattttcttccttagcgttaaatattcagttaccagagatttgtttcttcaaaatatatagGCTCGTGAATTCGCGAAGGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTTTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
                                                                                                                | | ||| | |  ||  |  |  ||    ||| || |    ||    |||||  |  |||| || |||||||||||||||| || ||||||||||||||||| || || | | | | | |  |||||||| | ||     ||   | |  | |    |   |     
--------------------------------------------------------------------------------------------------------------gtatagtttgtgtgatttttctgactttctgattaaggttttcga----tgttttgtggaaatttacagGCTCGTGAATTCGCAAATGAGCTTCGTGCAAGCACGAAGGTCTTAAGGAGTTCAGCTGTTTGGATGGACAATGCTGTTGCTGGTGGAGGAACGACTGGTT

upper sequence: AT1G47560.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: EFJ12163 (Selaginella moellendorffii), 3'ss of exon 13
gtgaggacaaatatatgtttctttatcaatttgaccgctgactaactgggacacttaattgactaaaagactgctataacgtactgaatgttaatgtgtggatattcagcaaacattttattttcttccttagcgttaaatattcagttaccagagatttgtttcttcaaaatatatagGCTCGTGAATTCGCGAAGGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTTTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
                                                                                                   | || |||||      |  | |||    | ||    ||||       |||  |       |||||  |  |||| || |||||||||||||||| || ||||||||||||||||| || || | | | | | |  |||||||| | ||     ||   | |  | |    |  ||     
---------------------------------------------------------------------------------------------------gtatgttcagtttgtgtgatttttctgactttctgattaag------gttttcga-----tgttttgtggaaatttacagGCTCGTGAATTCGCAAATGAGCTTCGTGCAAGCACGAAGGTCTTAAGGAGTTCAGCTGTTTGGATGGACAATGCTGTTGCTGGTGGAGGAACGGCTGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccttagcgttaaatattcagttaccagagatttgtttcttcaaaatatatagGCTCGTGAATTCGCGAAGGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTTTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
                                atttgtttcttcaaaa  TA-rich tract