Sequence
atgc intronic sequence ATGC exonic sequencegtgaggaaagatatatgtttctttatcaatttgaccgctgactaactgggactcttaattgactaaaaggctgctataacctactgaatgttaatgtgtggataatcagcaaacattttattgtcttccttagctttaaattttcagttaccaaagctttgtttcttcaaaatatacagGCTCGTGAATTCGCGAATGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTCTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G47550.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G47550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 13
gtgaggaaagatatatgtttctttatcaatttgaccgctgactaactgggactcttaattgactaaaaggctgctataacctactgaatg-ttaatgtgtggata-atcagcaaacattttattgtcttccttagctttaaattttcagttaccaaagctttgtttcttcaaaatatacagGCTCGTGAATTCGCGAATGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTCTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
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------------------------------------------------------------------------------acttgataggtccttaattaattactagatcttgtgccagtttagaaa-ttcagtatgtttgaatatgtggtgtctgaaagttc--ttttatatcatctatagGCTCGTGAGTTTGCAAATGAGCTTCGTGCTAGTACCAAAGCATCAAGAAATCCAACTGTCTGGCTTGAAGCTTCTACAGGCTCTGGTCAAAATATGAACA
upper sequence: AT1G47550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: EFJ29370 (Selaginella moellendorffii), 3'ss of exon 13
gtgaggaaagatatatgtttctttatcaatttgaccgctgactaactgggactcttaattgactaaaaggctgctataacctactgaatgttaatgtgtggataatcagcaaacattttat-tgtcttccttagctttaaattttcagttaccaaagctttgtttcttcaaaatatacagGCTCGTGAATTCGCGAATGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTCTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
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--------------------------------------------------------------------------------------------------------------gtatagtttgtgtgatttttctgactttctgattaaggttttcgatgttttgtg-----gaaatttacagGCTCGTGAATTCGCAAATGAGCTTCGTGCAAGCACGAAGGTCTTAAGGAGTTCAGCTGTTTGGATGGACAATGCTGTTGCTGGTGGAGGAACGACTGGTT
upper sequence: AT1G47550.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: EFJ12163 (Selaginella moellendorffii), 3'ss of exon 13
gtgaggaaagatatatgtttctttatcaatttgaccgctgactaactgggactcttaattgactaaaaggctgctataacctactgaatgttaatgtgtggataatcagcaaacattttattgtcttccttagctttaaattttcagttaccaaagctttgtttcttcaaaatatacagGCTCGTGAATTCGCGAATGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTCTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
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-----------------------------------------------------------------------------------------------gtatgttcagtttgtgtg-atttttctgactttctga--ttaaggttttcgat------------gttttgtggaaatttacagGCTCGTGAATTCGCAAATGAGCTTCGTGCAAGCACGAAGGTCTTAAGGAGTTCAGCTGTTTGGATGGACAATGCTGTTGCTGGTGGAGGAACGGCTGGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164099657|gb|ES128212.1|ES128212EST: CCCTGAACTTGCTCCTTCGTCGAGAG GCTCGTGAATTCGCGAATGAGCTTCGTGCAAGACACAAAAGTATCACGAAA
genomic: CCCTGAACTTGCTCCTTCGTCGAGAGgtgaggaaag ... aaatatacagGCTCGTGAATTCGCGAATGAGCTTCGTGCAAG-CACAAAAGTATCACGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttccttagctttaaattttcagttaccaaagctttgtttcttcaaaatatacagGCTCGTGAATTCGCGAATGAGCTTCGTGCAAGCACAAAAGTATCACGAAATCCTACTGTCTGGCTAGAAGGATCTACGGGTTCTAGTCAGAATGCAAACA
tttaaattttcagtta TA-rich tract