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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggtcatttcccgttttgcttttgataacttagtttttcttacaatattttccaaacttaccagattcatttgtttcagAGTATTGATGAAGATAAGCTATTCAATCTATTTTCTCTTTACGGGAACATTGTAAGGATTAAGCTTCTTCGGAACAAACCTGACCATGCCCTTGTCCAAA

Basic information

species Arabidopsis thaliana
transcript AT1G43190.3
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124933281|gb|EL010451.1|EL010451
EST:     CCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGAT                         AGTATTGATGAAGATAAGCTATTCAATCTATTTTC
genomic: CCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATgtaagttggt ... tttgtttcagAGTATTGATGAAGATAAGCTATTCAATCTATTTTC
EST: gi|124982461|gb|EL055269.1|EL055269
EST:     CCTGAATGCAGAT                         AGTATTGATGAAGATAAGCTATTCAATCTATTTTCTCTTTACGGGAACATT
genomic: CCTGAATGCAGATgtaagttggt ... tttgtttcagAGTATTGATGAAGATAAGCTATTCAATCTATTTTCTCTTTACGGGAACATT
EST: gi|125208893|gb|EL223847.1|EL223847
EST:     CCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGAT                         AGTATTGATGAAGATAAGCTATTCAAT
genomic: CCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATgtaagttggt ... tttgtttcagAGTATTGATGAAGATAAGCTATTCAAT
EST: gi|47829251|gb|CK118935.1|CK118935
EST:     CCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGAT                         AGTATTGATGAAGATAAGCTATTCAATCTATTTTCTCTTTACGGGAACATT
genomic: CCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATgtaagttggt ... tttgtttcagAGTATTGATGAAGATAAGCTATTCAATCTATTTTCTCTTTACGGGAACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacttagtttttcttacaatattttccaaacttaccagattcatttgtttcagAGTATTGATGAAGATAAGCTATTCAATCTATTTTCTCTTTACGGGAACATTGTAAGGATTAAGCTTCTTCGGAACAAACCTGACCATGCCCTTGTCCAAA
                              aacttac  putative branch site (score: 2)
                                             tttgtttc  putative PPT
     ttagtttttcttacaa  TA-rich tract