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gtatgcaaataagattctttttcaatactgatattttgttacgacaaacttgactaaaaaagcttttgactcatgatttacagCTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAACTGTGAAGGAATGCAGATGGAGAGCCTTGACGCTCTACTATCAATAGCAA
species | Arabidopsis thaliana |
transcript | AT1G31420.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATCCAACCGATGCTTCCTTCATCGAGAAAGGCCTTAACGTTGTTGGTTGG CTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAACEST: gi|125130489|gb|EL173677.1|EL173677
genomic: A-CCAACCGATGCTTCCTTCATCGAGAAAGGCCTTAACGTTGTTGGTTGGgtatgcaaat ... tgatttacagCTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAAC
EST: CCTTAACGTTGTTGGTTGG CTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAACEST: gi|125003279|gb|EL075548.1|EL075548
genomic: CCTTAACGTTGTTGGTTGGgtatgcaaat ... tgatttacagCTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAAC
EST: GCCTTAACGTTGTTGGTTGG CTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAAC
genomic: GCCTTAACGTTGTTGGTTGGgtatgcaaat ... tgatttacagCTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAAC
tgatattttgttacgacaaacttgactaaaaaagcttttgactcatgatttacagCTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAACTGTGAAGGAATGCAGATGGAGAGCCTTGACGCTCTACTATCAATAGCAA
actaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaaataagattctttttcaatactgatattttgttacgacaaacttgactaaaaaagcttttgactcatgatttacagCTAAAGTTCTTAATCAGCGAAAAACGGCCAAGGGATATTGTTGATCCAAACTGTGAAGGAATGCAGATGGAGAGCCTTGACGCTCTACTATCAATAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA