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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttactctctatcttgtcacgttaaagaatcatgatcttgaaatattctaaattgtacgctatcttatgaaaccttggtttctgaactaccttcttgcagTCTAAAACAAAATGTCGTCGAAGCGCATTTTTCCGTCATTTTGGGGAACCATCACAAGATTGCAATG

Basic information

species Arabidopsis thaliana
transcript AT1G31360.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164138259|gb|ES036794.1|ES036794
EST:     TAGTAAGATACTGTCAG                         TCTAAAACAAAATGTCGTCGAAGCGCA-TTTTCCGTCATTTTGGGGAACCA
genomic: TAGTAAGATACTGTCAGgtacgctgat ... cttcttgcagTCTAAAACAAAATGTCGTCGAAGCGCATTTTTCCGTCATTTTGGGGAACCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaaattgtacgctatcttatgaaaccttggtttctgaactaccttcttgcagTCTAAAACAAAATGTCGTCGAAGCGCATTTTTCCGTCATTTTGGGGAACCATCACAAGATTGCAATG
 ttctaaa  putative branch site (score: 2)
                                         ctaccttctt  putative PPT
               tatcttat  TA-rich tract