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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaatctgctactactgtttctttcttgctcatctgatctcttcttatgaactcattccacttgtggattttgacagtgtgttccatctgaggacaacaatcctgccagCAGAAGATGAGATGCCGGAGATCATGGATAGCTTCAAGAAGTTCAACGACGAGTTCATGACTCAGTATGATAATAACTTTGGTTATTCGAAAATGTGATT

Basic information

species Arabidopsis thaliana
transcript AT1G23310.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23310.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 11
--------------gtaaagaatctg-----ctactactgtttctttcttgctcatctgatctcttcttatgaactcattc-cacttgtggattttgacagtgtgttccatctgaggacaacaatcctgccagCAGAAGATGAGATGCCGGAGATCATGGATAGCTTCAAGAAGTTCAACGACGAGTTCATGACTCAGTATGATAATAACTTTGGTTATTCGAAAATGTGATT
               ||   ||||||      ||  ||||    ||| |||    | | || |       | |||| || |    |||  |       ||| |||||||| |||||||| || ||||||||||| || || || ||||| |  ||||||   |||||||||||||||||||||   ||||||  ||||||                                 
gacttgtcttcttgataggaaatctgaaaagatatcactgacgattttttgtgtgtat-atataagtaagtaaactgatgcatggttggtgtgcactgcagGGTGTTCCACCTGAGGACGACCATCCTGCCAGCTGAGGAGGACATGCCTGCCATCATGACCAGCTTCAAGAAGTTCAACGACACTTTCATGGATCAGTAC--------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccacttgtggattttgacagtgtgttccatctgaggacaacaatcctgccagCAGAAGATGAGATGCCGGAGATCATGGATAGCTTCAAGAAGTTCAACGACGAGTTCATGACTCAGTATGATAATAACTTTGGTTATTCGAAAATGTGATT
              ttttgac  putative branch site (score: 3)
                                              tcctgcc  putative PPT
             attttga  TA-rich tract