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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagaatatttgagattcatctgtatatcttacaaagtctgaagaatttatgtatgcataacataatattagcattttcttctgaaatgcagATCTCTTCTATCGGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTTTACCTTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G19450.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124868975|gb|EH953412.1|EH953412
EST:     CGGCTTCTACTCATG                         ATCTCTTCTATCGGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTT
genomic: CGGCTTCTACTCATGgtgaagaata ... tgaaatgcagATCTCTTCTATCGGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTT
EST: gi|125243273|gb|EL257358.1|EL257358
EST:     GGATAGCGACATGGTTGGTGGATAAAGCAGGTCGTCGGCTTCTACTCATG                         ATCTCTTCTATCGGAATGACGATAAGCCTCGTGATTGTAG
genomic: GGATAGCGACATGGTTGGTGGATAAAGCAGGTCGTCGGCTTCTACTCATGgtgaagaata ... tgaaatgcagATCTCTTCTATCGGAATGACGATAAGCCTCGTGATTGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaagaatttatgtatgcataacataatattagcattttcttctgaaatgcagATCTCTTCTATCGGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTTTACCTTAAG
                  gcataac  putative branch site (score: 3)
                                   cattttcttct  putative PPT
       aatttatgtatgcata  TA-rich tract