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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatacttgatcatgttacacttaaaattttatgcatttgcgctcaattcgtctagaaatactgtacaaagaaactaggaatctatgaggactgaggtcatatcaatatactcattggactcagtgtcatacctgacttaatgtcattgttcacaattttttgtttctgtgccatttttgttgcagAACCTGTGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATTGAAAAACGACTATCTGTATACGACGTATGACTGTGTTAACTTTGGCCCATG

Basic information

species Arabidopsis thaliana
transcript AT1G18470.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125312618|gb|EL326703.1|EL326703
EST:     AAAGATATCAGTTTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAG                         AACCTGTGCAGACAAGTGTACAA
genomic: AAAGATATCAGTTTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGgtaaagatac ... tttgttgcagAACCTGTGCAGACAAGTGTACAA
EST: gi|86079365|gb|DR375122.1|DR375122
EST:     AAAGATATCAGTTTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAG                         AACCTGTGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATTGA
genomic: AAAGATATCAGTTTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGgtaaagatac ... tttgttgcagAACCTGTGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATTGA
EST: gi|19742839|gb|AU228192.1|AU228192
EST:     AAAGATATCAGTTTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAG                         AACCTGTGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATTGA
genomic: AAAGATATCAGTTTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGgtaaagatac ... tttgttgcagAACCTGTGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgacttaatgtcattgttcacaattttttgtttctgtgccatttttgttgcagAACCTGTGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATTGAAAAACGACTATCTGTATACGACGTATGACTGTGTTAACTTTGGCCCATG
                                        ccattttt  CT-rich tract
                     acaattttttgttt  TA-rich tract