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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacagttagtctctctcatttctttaccatcacatttaccatttgacaatacccaaagactaaaatatgcgtgggtcttgtaatgttacagCAACCGAGTCCTTGACCTGATAGAACACATGGCGTTAGTTGCAGCCAGCCGCTAAAACCATATCCCGCCAACGTTCGTTAGGTAGTTTTTGTTACATTGG

Basic information

species Arabidopsis thaliana
transcript AT1G16300.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741929|gb|AU227282.1|AU227282
EST:     AAGTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAATGGGGTTACAG                         CAACCGAGTCCTTGACCTGATAGAACACATGGCGTTAGTTGCAGCCAGCCG
genomic: AAGTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAATGGGGTTACAGgtaacagtta ... aatgttacagCAACCGAGTCCTTGACCTGATAGAACACATGGCGTTAGTTGCAGCCAGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccatttgacaatacccaaagactaaaatatgcgtgggtcttgtaatgttacagCAACCGAGTCCTTGACCTGATAGAACACATGGCGTTAGTTGCAGCCAGCCGCTAAAACCATATCCCGCCAACGTTCGTTAGGTAGTTTTTGTTACATTGG
                     gactaaa  putative branch site (score: 2)
                  aaagactaaaatat  TA-rich tract