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gtatcagctgattaacacggtttctgctttagtttaatttgctttataccccaacaactccaaatgaatttcgttgcatgacatttcggttaacgcttattaatcaaattacgtctatgattaaaccgttgtagGGAGATGGTTACAATGTTGGGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGATCAGCTGTCGCCG
species | Arabidopsis thaliana |
transcript | AT1G12050.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACGGAGACCAAGTCACCTTCTCAGGTGTATGCAAG GGAGATGGTTACAATEST: gi|124748276|gb|EH838406.1|EH838406
genomic: ACGGAGACCAAGTCACCTTCTCAGGTGTATGCAAGgtatcagctg ... accgttgtagGGAGATGGTTACAAT
EST: AGACGTTTCTCGAAGACGGAGACCAAGTCACCTTCTCAGGTGTATGCAAG GGAGATGGTTACAATGTTGGGTTTGG
genomic: AGACGTTTCTCGAAGACGGAGACCAAGTCACCTTCTCAGGTGTATGCAAGgtatcagctg ... accgttgtagGGAGATGGTTACAATGTTGGGTTTGG
gacatttcggttaacgcttattaatcaaattacgtctatgattaaaccgttgtagGGAGATGGTTACAATGTTGGGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGATCAGCTGTCGCCG
tattaat putative branch site (score: 2)
ttattaatcaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcagctgattaacacggtttctgctttagtttaatttgctttataccccaacaactccaaatgaatttcgttgcatgacatttcggttaacgcttattaatcaaattacgtctatgattaaaccgttgtagGGAGATGGTTACAATGTTGGGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGATCAGCTGTCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG