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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttcaaatacacaacaattcgcagcaacacactgtctcttaagattttttttttctttctggtgaatgcagGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACTGTGCCTCTCAATGTAATCGTTACTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G11000.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11000.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 13
-------------------------gtgcgtttcaaatacacaacaattcgcagcaacacactgtctcttaagattttttttttctttctggtgaatgcagGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACTGTGCCTCTCAATGTAATCGTTACTCAG
                          |    |   ||| |     |||||    |  |||          |||  | ||   ||||    |||  |||||||||||| ||||||||||||||||| ||| ||||||||||||| || |||||  | || |||
ctatgctagatgaattcattgaaacataacatgtgaatgc-tgtaaattcatgactccactaatgaaaacaagcatcttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcgcagcaacacactgtctcttaagattttttttttctttctggtgaatgcagGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACTGTGCCTCTCAATGTAATCGTTACTCAG
                            ttttttttttctttct  CT-rich tract
                    tcttaagatttttttt  TA-rich tract