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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaattattaacaaggttgatcttcttgaaataataataaaagatgaatgaaagcaaacgaatctttttgaactaacatatgaatgtttcgatttccatccttggaaaaattttgaaccacagGTGCAGACCTATGCGTTAGAATGCTAGACAGGGAAGAATTTGGGTCTCAACCATTCTATATACACACTCTCATAGACAGATCTTGCATTGCGGGACTATT

Basic information

species Arabidopsis thaliana
transcript AT1G04140.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124930991|gb|EL008391.1|EL008391
EST:     TAGCTCTCCCGATGAGAACTTGGCCGAG                         GTGCAGACCTATGCGTTAGAATGCTAGACAGGGAAGAATTTGGGTACTCAA
genomic: TAGCTCTCCCGATGAGAACTTGGCCGAGgtagaattat ... tgaaccacagGTGCAGACCTATGCGTTAGAATGCTAGACAGGGAAGAATTTGGGT-CTCAA
EST: gi|124982418|gb|EL055228.1|EL055228
EST:     CGTCCAATCTCACTGCACCAAATAGCTCTCCCGATGAGAACTTGGCCGAG                         GTGCAGACCTATGCGTTAGAATGCTA
genomic: CGTCCAATCTCACTGCACCAAATAGCTCTCCCGATGAGAACTTGGCCGAGgtagaattat ... tgaaccacagGTGCAGACCTATGCGTTAGAATGCTA
EST: gi|124951833|gb|EL027162.1|EL027162
EST:     CGTCCAATCTCACTGCACCAAATAGCTCTCCCGATGAGAACTTGGCCGAG                         GTGCAGACCTAT
genomic: CGTCCAATCTCACTGCACCAAATAGCTCTCCCGATGAGAACTTGGCCGAGgtagaattat ... tgaaccacagGTGCAGACCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaactaacatatgaatgtttcgatttccatccttggaaaaattttgaaccacagGTGCAGACCTATGCGTTAGAATGCTAGACAGGGAAGAATTTGGGTCTCAACCATTCTATATACACACTCTCATAGACAGATCTTGCATTGCGGGACTATT
  aactaac  putative branch site (score: 1)
                                     aaaaattttgaa  TA-rich tract