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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttctcttgtgaatctaagcactatcagtttcttgagcctatataagataactgaaagagagaggttcttcttgaattggtggttggttagGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGGTTAAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATATAGGTAATGTATGT

Basic information

species Arabidopsis thaliana
transcript AT5G55220.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088466|gb|DR384225.1|DR384225
EST:     AATTCAAGAAACATAAACAAGAGTTCGTCGAGGAGCGTGTGAAAGATCAG                         GTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGGTTAAAAGACCGA
genomic: AATTCAAGAAACATAAACAAGAGTTCGACGAGGAGCGTGTGAAAGATCAGgttagttctc ... ggttggttagGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGGTTAAAAGACCGA
EST: gi|124807568|gb|EH893972.1|EH893972
EST:     GGAGCGTGTGAAAGATCAG                         GTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGGTTAAAAGACCGA
genomic: GGAGCGTGTGAAAGATCAGgttagttctc ... ggttggttagGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGGTTAAAAGACCGA
EST: gi|125166344|gb|EL192186.1|EL192186
EST:     AATTCAAGAAACATAAACAAGAGTTCGACGAGGAGCGTGTGAAAGATCAG                         GTACAAGAGATTTTAGA
genomic: AATTCAAGAAACATAAACAAGAGTTCGACGAGGAGCGTGTGAAAGATCAGgttagttctc ... ggttggttagGTACAAGAGATTTTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctatataagataactgaaagagagaggttcttcttgaattggtggttggttagGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGGTTAAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATATAGGTAATGTATGT
         agataac  putative branch site (score: 3)
     tataagataa  TA-rich tract