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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggtgtgctttcagcttactttactgttatctgtatagaatttttagttcatgtttgtagtcaagactaattaataccaagtctacttgttgcagAAAATGTATTTAATCTTTGCAGCTTCCCCAATCTAGTTGGGACAAAGTATAGACAACTAAGACTGGGGTTCCAGGAG

Basic information

species Arabidopsis thaliana
transcript AT5G43745.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43745.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 12
gtacggtgtgctttcagcttactttactgttatctgtatagaatttttagttcatgt--ttgtagtcaagactaa---ttaataccaagtctacttgttgcagAAAATGTATTTAATCTTTGCAGCTTCCCCAATCTAGTTGGGACAAAGTATAGACAACTAAGAC-TGGGGTTCCAGGAG
 | |  |    ||  |   |  || |   ||    ||    | ||||||||| ||||   || | | |    | |    ||||    ||| ||    |||||||||||||||| |||||||||||||| || |||||||  ||    |  ||||||||| |||||| | |  |||||| | 
ttgccttaaatttgtaaactggttaaacctt--tcgtgataactttttagttgatgtacatgcatttattcttgaattctaatttttagt-tatcatttgcagAAAATGTATTCAATCTTTGCAGCTTGCCTAATCTAGAAGGACTGACATATAGACAAATAAGACATAGATTTCCAGAA-

upper sequence: AT5G43745.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA20G35310.1 (Glycine max), 3'ss of exon 12
gtacggtgtgctttcagcttactttactgttatctgtatagaatttttagttcatgt--ttgtagtcaagactaa---ttaataccaagtctacttgttgcagAAAATGTATTTAATCTTTGCAGCTTCCCCAATCTAGTTGGGACAAAGTATAGACAACTAAGACTGGGGTTCCAGGAG
 | |  |    ||  |   |  || |   ||   | |   || ||||||||| ||||   || | | |    | |    ||||    ||| |||   |||||||||||||||| |||||||||||||| || |||||||  || |  |  ||||| ||| ||||||   | || || || 
ttgccttaaatttgaaaactgtttaaacctt--ttatgatgactttttagttgatgtacatgcatttattcttgagttctaatttttagt-taccatttgcagAAAATGTATTCAATCTTTGCAGCTTGCCTAATCTAGAAGGAATGACATATAGGCAAATAAGACATAGATTTCAAGAA

upper sequence: AT5G43745.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 12
----gtacggtgtgctttcagcttactttactgttatctgtatagaatttttagttcatgtttgtagtcaagactaattaataccaagtctacttgttgcagAAAATGTATTTAATCTTTGCAGCTTCCCCAATCTAGTTGGGACAAAGTATAGACAACTAAGACTGGGGTTCCAGGAG
     ||        |||    | |    |        | |  |  | ||| | ||| | ||  |    ||   |||| | | ||   | |  ||||||||||||||||||||||||||| ||| ||||| |||||||  || | ||||||||| ||| ||||||  || ||  | | |
tccaataaatcaattttttttttaaaaagaaaagccaatattcatgagttt-aattcttcttgatttggaaagttaatcacttcctgcttt-tttgttgcagAAAATGTATTTAATCTTTTCAGTTTCCCTAATCTAGCCGGAATAAAGTATAGGCAATTAAGACGTGGATTTGAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagttcatgtttgtagtcaagactaattaataccaagtctacttgttgcagAAAATGTATTTAATCTTTGCAGCTTCCCCAATCTAGTTGGGACAAAGTATAGACAACTAAGACTGGGGTTCCAGGAG
                                         tctactt  CT-rich tract
                      aagactaattaata  TA-rich tract