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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaacggaaaaccgtagtgtctagaagataaaactagtggaaaaggattagaaaaaaaagaaactgaaaaaactttgatgttgatgcttgtgcaaatgttattatttcataatataacttaatcatgcagAAGAGAAATGTAAAGTCCCTGAGAAGAACATTTGGAGCTTTGTTGAGGAAGGAAAGTGAAAAACAAACGAAAAGCCGGTAGTATCCTCTGTTGAATACCA

Basic information

species Arabidopsis thaliana
transcript AT5G28900.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125323831|gb|EL337911.1|EL337911
EST:     GAGGTTTTGGGATGAGTCGTCGCTGGAGGCTCCCTTTTGAGTTCATAAAG                         AAGAGAAATGTAAAGTCCC
genomic: GAGG-TTTGGGATGAGTCGTCGCTGGAGGCTCCCTTTTGAGTTCATAAAGgtaagtcaac ... aatcatgcagAAGAGAAATGTAAAGTCCC
EST: gi|125133363|gb|EL174882.1|EL174882
EST:     TGAGTTCATAAAG                         AAGAGAAATGTAAAGTCCCTGAGAAGAACATTTGGAGCTTTGTTGAGGAAG
genomic: TGAGTTCATAAAGgtaagtcaac ... aatcatgcagAAGAGAAATGTAAAGTCCCTGAGAAGAACATTTGGAGCTTTGTTGAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgttgatgcttgtgcaaatgttattatttcataatataacttaatcatgcagAAGAGAAATGTAAAGTCCCTGAGAAGAACATTTGGAGCTTTGTTGAGGAAGGAAAGTGAAAAACAAACGAAAAGCCGGTAGTATCCTCTGTTGAATACCA
                  aaatgttattatttca  TA-rich tract