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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttggtcctggcttctcttttcttaagttagaatgatcccttctttcttcctttattcatttctccattgcaattttttttattctctcagaatcttattctgtttttctcatattttggacagAGAGATAAAAATGAAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATG

Basic information

species Arabidopsis thaliana
transcript AT5G28350.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28350.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G052750_T02 (Zea mays), 3'ss of exon 11
gtattgttggtcctggcttctcttttcttaagttagaatgatcccttctttcttcctttattcatttctccattgcaattttttttattctctcagaatcttattctgtttttctcatattttggac-agAGAGATAAAAATGAAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATG
                            |    |   || || |     || |   || | | |||          ||  |||| |     |||  ||| | ||| |  | |  | ||  |||  || |||| || || | ||| || || || | ||| ||| | || || ||||| ||||| |||||||| || ||||| ||||||||||| ||||| || |||||||
----------------------------tgctctgagatcattctcaaattttgttttgacttattggcttg--aaaacattttctgacgcctctaaatttaattatcctatgttaattgtttaaaccagAGGGACAAGATTGATGAAGCTTTGCGCTTGGCAAATTTGTCAGCAGAAAAACCTCACTTCTCTCACTGTCTAGAGTGGCTTCTGTTTACAGTATTTGATG

upper sequence: AT5G28350.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 12
gtattgttggtcctggcttctcttttcttaagttagaatgatcccttctttcttcctttattcatttctccattgcaattttttttattctctcagaatctta-ttctgtttttc-tcatattttggacagAGAGATAAAAATGAAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATG
                            |   || |  |  ||  || |    |    || |   | ||  |  | || || | ||  | |   ||  || || |||||||| |  |  | | |    ||||| || || |  || || || ||||  || ||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||| |||||||
----------------------------tgcattcg--tactcaattttcatcttaggtagtagatgctg-acagaaaattctattgctattctaggttcctaattctgtttctaattttgtatacaccagAGGGACAAGAGCGAGGAAGCATTACGTTTGGCACAATTATCAGCAGAGAAGCCTCATTTTTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTATTTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaattttttttattctctcagaatcttattctgtttttctcatattttggacagAGAGATAAAAATGAAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATG
                                  tttttctcatatttt  CT-rich tract
                                  tttttctcatatttt  TA-rich tract