Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA

Basic information

species Arabidopsis thaliana
transcript AT5G27030.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os01g15020.2 (Oryza sativa), 3'ss of exon 13
-----------------------gtgcggcaaggattgaa--tcaaactatattttacatcaattattatactgttttaccaa--tccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgc-ctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                        |    | ||   ||    | |   ||||   || |  | || || |   | || | ||      || ||    |  || ||   | | |  || |  | |  |   | |||     ||| ||| ||  ||  ||      ||        ||||||| |    |  |||| || || |||||| || | || |||||||| || || |||||||||||| || |||| ||||| || || ||||||||||| || ||||||||||| |
gtgggttttctgaacagaatatgatatttccagttgtggtgcttattttataagctaaacaatttcttctcaagattgaacagaggtagtatgcgtgattattaatgtgtccattcagtaaaaaaggggctgtctaatgttattaatgtcgatttcttgtgttgatgtgct--attcttatgttccctgaagTTTATCTTCTCAACCTCCCTCGACGGGAAAATTAAGGCATGGCTTTATGATCATATGGGATCCAGGGTAGATTATGATGCTCCAGGAAAATGGTGTACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G316967_T01 (Zea mays), 3'ss of exon 13
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                         |    ||   | | |  ||   |    |  |  || ||  |   | ||    ||    ||||        |  |    || ||||  | || |||  |    | |||||||| || |||||  || | ||||| ||||| || |||||||||||||| ||| |||| || || || ||||| |||||||| || || |||||||| |
---------------------------------------------------------acttattcacacagctctatttt----gttattttacaatttccagtactcagca---gaatgagcaaaatcaagtctaaaacatgactttattacgtttgatgcagTTCATCTTCTCAACTTCCCTTGATGGAAAAATTAAGGCCTGGCTTTATGACAATATGGGATCTAGGGTGGACTACGATGCTCCTGGCAAGTGGTGTACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G416836_T01 (Zea mays), 3'ss of exon 11
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgaca-catttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcg---ttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                                   |   |  |   ||   | | | |||||     ||   | ||     | |  ||      | |||| |||| | |   | |   ||||||| |    | |||||||| || |||||  || | ||||| ||||| || |||||||||||||| ||| |||| || || || |||||||| ||||| || || |||||||| |
-------------------------------------------------------------------atctcttttttgttcgcaatagcatttgtccaagagctgtccccattgtttatcatcaat-tttatcaaattcctggttgatattcttatgtttgatgcagTTCATCTTCTCAACTTCCCTTGATGGAAAAATTAAGGCCTGGCTTTATGACAATGTGGGATCTAGGGTGGACTATGAAGCTCCTGGCAAGTGGTGTACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA10G29090.1 (Glycine max), 3'ss of exon 14
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatct--tgcctatgaatttc-tgttctttaccaaaatacatctcg-----ttcttatttggattt-cagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                                        |   | ||| | | | ||||||| ||   | ||| |  ||  |  | || ||    | | |||  | ||             |  |||| |   ||| ||||||||||||||||| ||||| |||||||||||||| || ||||| || |||||  ||||||| || |||||||||||||| || ||| | ||||| || |
------------------------------------------------------------------------acatacgtaaatggc-catttcaaatgagaatatgtattgatttagcatctcgcaatgtgtacacacatgagctctaaaggttgtttatgtaactttgcagTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGCTATACGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGCACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA19G41840.2 (Glycine max), 3'ss of exon 13
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                              ||  | ||   | | | || |     || |   | || |||| |  |   ||  ||   |||   || | |  | |  || | ||  || |     || |||||  |||||||||| ||||| ||||| ||||||||||||||| | ||||||||| ||||||| || ||||| |||||||| || ||| | |||||||| |
--------------------------------------------------------------ttacatgagttacaca-tacatatttcaataattgtattattctagtaattaataaacactgcctttaatcctactgaatgttgtcattgta-actttgcagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA20G38230.1 (Glycine max), 3'ss of exon 14
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataa-agtagacgacacat-ttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggattt-cagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                         |  |   | ||   | ||   |   ||  | |  | || || ||| ||         ||   |    ||  || ||  ||  |        |  |||| |   ||| ||||||||||||||||| ||||| |||||||||||||| || ||| | || |||||  ||||||| || |||||||||||||| || ||| | ||||| || |
---------------------------------------------------------acacacgtaaatggccatgtcaaatgagaatatgtattgatttagcatctcacaatgtacacacacatgcactcta--aaggt--------tgtttatgtaactttgcagTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGTTATACGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGCACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 14
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                    |||  ||  |||   || ||| ||  || ||  |         | || |||| |  |   ||  ||   |||   || | |  | || || | ||  || |     || |||||  |||||||||| ||||| ||||| ||||||||||||||| | || |||||| ||||||| || ||||| |||||||| || ||| | |||||||| |
----------------------------------------------------tac--atgagttacgagtaca-tattgtcgataat--------tgtattattctagtaattaataaacactgcctttaatcttactaaatgttgtcattgta-attttgcagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATACGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 13
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggattt-cagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                             |     |  |     || | |     |  |||  | ||||    |  |   ||   |      |||| ||   | ||    ||      |  |    ||| ||||||||||||||||| || || ||||||||||| ||||||||| | ||||| ||  | || ||||||||||||||||||||||| ||   |||||| || |
-------------------------------------------------------------gaagatatgatttctaattgggattaaggttttgtttagttgagttatagttacagac----attctctaatgatatgttgctttccactcgtaaattttgcagTTCATATTTTCAACTGCTATGGATGGGAAAATTAAAGCCTGGTTGTATGACAACATTGGGTCCAGAGTTGACTATGATGCTCCTGGGCTATGGTGCACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 3'ss of exon 13
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccg--tttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                 ||   || ||  |  ||  || || |||  ||||      |  |   || | |   | |  ||  ||  ||  ||||  ||||      ||  | |||||          ||  ||||| ||||| ||||| || || ||||| || |||||||||||||| ||||||  ||| ||||| ||||||||||||||||| || ||  | ||||| || |
-------------------------------------------------ttagccccatgtgaattaaaacaaaaatggagtaattcgtatctgaaatgt-gcggtgtggtgtgta-aaacctctgacctttg----gatg-acctcgt----------atgccagTTTATATTCTCAACAGCTATCGATGGCAAGATAAAAGCCTGGCTCTATGATCTTCTTGGTTCTAGAGTTGACTATGATGCACCAGGGCATTGGTGCACTA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: EFJ30926 (Selaginella moellendorffii), 3'ss of exon 13
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                                                                            |   | |  ||| | ||| | |   |  ||   | |  |  ||||| |   | ||||| |||||||| |||||  | ||||||||||| ||||| |||||||| |||||||| |||||  |||| || ||||||||||| |||   ||||| || |
-----------------------------------------------------------------------------------------------------------gtctgtgtccattgccgttttct-ttattatgggttt-atggttatt-gctctgcagTTTATATTTTCCACCGCACTTGATGGGAAAATCAAAGCTTGGCTTTACGATAATCTCGGTTCTCGAGTAGATTATGATGCTCCTGGTCGCTGGTGCACAA

upper sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: EFJ17248 (Selaginella moellendorffii), 3'ss of exon 13
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                                                                                            |   |||  ||| | ||| | |   |  ||   | |  |  ||||| |   | ||||| |||||||| |||||  | ||||| ||||| ||||| |||||||| |||||||| |||||  |||| || ||||||||||| |||   ||||| || |
-----------------------------------------------------------------------------------------------------------gtctgtatccattgccgttttct-ttattatgggttt-atggttatt-gctctgcagTTTATATTTTCCACCGCACTTGATGGTAAAATCAAAGCTTGGCTTTACGATAATCTCGGTTCTCGAGTAGATTATGATGCTCCTGGTCGCTGGTGCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA
                                tctcgttcttattt  CT-rich tract
                        aaaatacat  TA-rich tract