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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattttgtatcctagtattacttaattatcattttaccctttccatgatgcatatttgttacttaatataatgttcgcatactttttcagGATGATGCACACATATTCTGTACAACGGAACAG

Basic information

species Arabidopsis thaliana
transcript AT5G26830.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125323676|gb|EL337758.1|EL337758
EST:     AGGCAAGTGGAGCACTTAGTGGATTGACTCGTGTCCGACGGTTCCAGCAG                         GATGATGCACACA
genomic: AGGCAAGTGGAGCACTTAGTGGATTGACTCGTGTCCGACGGTTCCAGCAGgtagattttg ... actttttcagGATGATGCACACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accctttccatgatgcatatttgttacttaatataatgttcgcatactttttcagGATGATGCACACATATTCTGTACAACGGAACAG
                         acttaat  putative branch site (score: 4)
                                            tactttttc  putative PPT
                atatttgttacttaat  TA-rich tract