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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaatgtttaatttttgtactgttaaccttagtaggaagtgcttagaatagctaatttactcttgtaaaatatttgatgttggaaaatgggttttgcagGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTG

Basic information

species Arabidopsis thaliana
transcript AT5G26780.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 12
taaaatgtttaatttt--tgtactgttaaccttagtaggaagtgcttagaatagctaatttactcttgtaaaatatttgatgttggaaaatgggttttgcagGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTG
 |  ||   ||| | |  | | | | ||| |||  |      |  ||  |||   ||    |     | | |||  |     |    ||||    | |  |||| |||||||| ||||||||||| || || ||||||   || || ||||||||||||||||| || ||||||||||||||||| || ||||| || || |
aatgatagctaaatgtgctttgcagataaacttgtttttt--tttttcaaatttttatgccatatggggacaattatcatcctcttcaaatttcatgtttagGGCATAGATGGTTCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAG

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 11
------------------------------------------------------------------------------taaaatgtttaatttt--tgtactgttaaccttagtaggaagtgcttagaatagctaatttactcttgtaaaatatttgatgttggaaaatgggttttg----cagGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTG
                                                                              |   | || | || |   ||| ||    |    |     |  || ||  | |    |    |    || | ||||||  || ||  ||||    || ||     |||| |||||||| ||||| ||||| || || ||||||   || |||||||||||||||||||| || ||||||||||||||||| || ||||| || || |
gtaggataaaagtgtgtttcacgttttgtcatttttttatagatattagctattgctttatacatactagctacttttttgtacgtattatctaaatgtgctaaatagacaaaacctacttgtttccagttctaatgccatgtctgaacaatattgtatttttaaaaaaaatttatgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTGCCAGGAG

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 12
----taaaatgtttaatttttgtactgttaaccttagtaggaagtgcttagaatagctaatttactcttgtaaaatatttgatgttggaaaatgggttttgcagGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTG
    | | ||   || | || | |     |   |  |||  || || ||    ||||      | |    | || ||| || ||| ||||  |   || | ||||| || ||||| || ||||| ||||| ||  | |||| ||| || |||||||| || || || ||||||||||| ||||| |||||||||||||| ||||
aaactgagataaatattgttcgcatataaaggatgggtataaattgtttt---tagcatgagaaatggaattaattatgtgttgt-ggaattttctttctacagGGTATTGATGGTTCTAGAGTTGAAAAGGTTCTTGAATCAGTTCACATTGCAGCCAATAAAAACACTGTTCCTGGGGATGTGTCTGCCATGGTTCCTGGTG

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 11
---------------------------------taaaatgtttaatttttgtactgttaaccttagtaggaagtgcttagaatagctaatttactcttgtaaaatatttgatgttggaaaatgggttttgcagGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTG
                                 | | |||||  || ||   | | |  |||    |    | |  |||  |  |     | |     |   |||  ||  |||           || || ||||  | || || ||||| |||||   |||  | ||  | |  || ||||||||||||||||| |||||||| || ||||| |||||  |||| || || |
gtgtattctgcaaactcttcctcagtactgttatcacatgttccatgttctaattttctaccagtatgactattaattaagactgtgtcctgatctgcgatgaatggttcttgtca---------ttgtgtagGGTGTGGACGGTTCAAGGGTGGAGCGAGTGATGGAGCTTGCCCACATTGCAGCAAACAAGAACACTGTTCCAGGAGATGTGTCTGCATTGGTACCTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatagctaatttactcttgtaaaatatttgatgttggaaaatgggttttgcagGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTG
        taatttactcttgtaa  TA-rich tract