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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatttatgaatcatactactttacctcattatgtcaaaggatttgctcaatcatagtactttactttttctttacttatttattttgtcgactatttagGACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGG

Basic information

species Arabidopsis thaliana
transcript AT5G24810.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24810.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os06g48770.1 (Oryza sativa), 3'ss of exon 12
gtataatttatgaatcatactactttacctcattatgtcaaaggatttgctcaatcatagtactttactttttctttacttatttattttgtcgactatttagGACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGG
                 ||    |||   || ||   |  ||  ||    |  ||||| |||    || |  ||| || |||| |    |      |||  ||| || ||| |  |  | |||||| |||| |||||||| ||||||||||| |||||||| |||||   | || ||||
----------------gtatgtttttcattctttcctttgaaatatccagt--atcatggta----acatgctctcta-ttatctgcact------tatgcagGGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGG

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os06g48770.2 (Oryza sativa), 3'ss of exon 11
-gtataatttatgaatcatactac-----tttacctcattatgtcaaaggatttgctca--atcatagtactttactttttctttacttatttattttgtcgactatttagGACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGG
  |     || |||||| |  ||      | |   ||||| | ||    ||  |   ||  ||||| |||    || |  ||| || |||| |    |      |||  ||| || ||| |  |  | |||||| |||| |||||||| ||||||||||| |||||||| |||||   | || ||||
catgagggttttgaatcttcttagaggtatgtttttcattctttcctttgaaatatccagtatcatggta----acatgctctcta-ttatctgcact------tatgcagGGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGG

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G140917_T01 (Zea mays), 3'ss of exon 13
gtataatttatgaatcatactactttacctcattatgtcaaaggatttgctcaatcatagtactttactttttctttacttatttattttgtcgactatttagGACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGG
      | | ||  | ||      |||| || ||      | | ||    |   || || |    |     || |||| |||||| |||     |   |  ||| |||||| || |  | |||||| |||| |||||||||||||||||||| |||||||| |||||   | |||||||
-----gtatgtgtttgatttgggcttac-tcgttcctctcaggtatccagt--gtcttaatgacat-----ttatttatttatttttttaaaaaatcctgcagGTCTTTCAGCTTCACTAAATGTTAGGATAGTTTATCTGGACATCATGAGGCCATTTGCTGAATCAACTTTGTTAGG

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv04s0008g02740.t01 (Vitis vinifera), 3'ss of exon 11
gtataatttatgaatc---atactactttacctcattatgtcaaaggatttgctcaatcatagtactttactttttctttacttatttattttgtcgactatttagGACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGG
 |  | ||||||  |      |  |   ||    |  |  | |  |    |  | |||  || || |||  ||||| ||| |||  | ||  ||      ||| ||| |||||| | |  ||| ||||||| ||    ||| | || ||||||||||||||||| |||||||||||   |||
-tcaagtttatgcttttggggaaaatgatattctaacaaattattgtgcctatttaatt-taatagtttttttttttttttctt--tcat--tgatatggattcagGGCTTTCAACCATAATGGATGTTCGCATCAGCTATTTAGATATCATGAGACCATTTGCTGAATCTGTTCTACAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcaatcatagtactttactttttctttacttatttattttgtcgactatttagGACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGG
        atagtactttactttt  TA-rich tract