1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaggcaaaacgagtatctttctaaatcataatgaaaggactagactctaagactgtatgatgatctaaaattatggaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAGTTGCAGCACTACTTGCTGAGGGAAACGTTCCCATTGGAATAGGAGAGAACACAA
species | Arabidopsis thaliana |
transcript | AT5G19220.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAG GACACTGTGATGCTTGGGGCAGATTACTACGAAACTGCAGCAGAAGEST: gi|125233203|gb|EL247288.1|EL247288
genomic: TAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGgtaggcaaaa ... gaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAG
EST: AAGAGTAGGCAGTAATGTTCAGTTGAAG GACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAGTTGCAEST: gi|124963957|gb|EL038256.1|EL038256
genomic: AAGAGTAGGCAGTAATGTTCAGTTGAAGgtaggcaaaa ... gaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAGTTGCA
EST: ATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAG GACACTGTGATGCTTGGGGEST: gi|124722564|gb|EH813966.1|EH813966
genomic: ATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGgtaggcaaaa ... gaaattctagGACACTGTGATGCTTGGGG
EST: ATAGCATTGTGGGAATTGGATCAAGAGTAGGCAGTAATGTTCAGTTGAAG GACACTGTGATGCTTGGGGCAGATTACTACGAAAEST: gi|125077303|gb|EL140140.1|EL140140
genomic: ATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGgtaggcaaaa ... gaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAA
EST: ATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAG GACACTGTGATGCTTGGGGCAGATTACTACGAAAEST: gi|116477128|gb|EG519720.1|EG519720
genomic: ATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGgtaggcaaaa ... gaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAA
EST: ATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAG GACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAGTTGCA
genomic: ATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGgtaggcaaaa ... gaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAGTTGCA
atgaaaggactagactctaagactgtatgatgatctaaaattatggaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAGTTGCAGCACTACTTGCTGAGGGAAACGTTCCCATTGGAATAGGAGAGAACACAA
atctaaa putative branch site (score: 3)
taaaattatggaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcaaaacgagtatctttctaaatcataatgaaaggactagactctaagactgtatgatgatctaaaattatggaaattctagGACACTGTGATGCTTGGGGCAGATTACTACGAAACTGAAGCAGAAGTTGCAGCACTACTTGCTGAGGGAAACGTTCCCATTGGAATAGGAGAGAACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA