Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttcttttaacctgaataagagaattgcttaattttaccccacttctttcttcatacaaaacagaaaccaattacattcttgttgttgttgcagTGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G16620.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124982163|gb|EL054988.1|EL054988
EST:     GCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAA                         TGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAGGTA
genomic: GCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttc ... gttgttgcagTGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAGGTA
EST: gi|86086248|gb|DR382007.1|DR382007
EST:     ATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAA                         TGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAG
genomic: ATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttc ... gttgttgcagTGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacttctttcttcatacaaaacagaaaccaattacattcttgttgttgttgcagTGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAG
                              aattacatt  TA-rich tract