1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...caaagccgaaatctatctccttatagatggtttattgttgtttatgaattcagaagttgatgatttcaaagttttaatgcattgcaaattgcaattgcagGTAGATAAGGGTACTAGGAGCGTTATCTGCCGCTTGACACGCAAATGTTTCAGCATATGATTGTCCTTTTTTTCTTACAACAATGAAGCCTTAAGTCGCA
species | Arabidopsis thaliana |
transcript | AT5G14260.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATTTTTGGTCGTGTCCTTGATCATTACAATCTGAGGTCGCTTAACTACG GTAGATAAGGGTGTACTAGGAGCGTTATCTGCCGCTTGACACGCAAATGTTEST: gi|86078005|gb|DR373762.1|DR373762
genomic: AATTTTTGGTCGTGTCCTTGATCATTACAATCTGAGGTCGCTTAACTACGgtcagttttt ... gcaattgcagGTAGATAAGGGT--ACTAGGAGCGTTATCTGCCGCTTGACACGCAAATGTT
EST: AATTTTTGGTCGTGTCCTTGATCATTACAATCTGAGGTCGCTTAACTACG GTAGATAAGGGTGTACTAGGAGCGTTATCTGCCGCTTGACACGCAAATGTT
genomic: AATTTTTGGTCGTGTCCTTGATCATTACAATCTGAGGTCGCTTAACTACGgtcagttttt ... gcaattgcagGTAGATAAGGGT--ACTAGGAGCGTTATCTGCCGCTTGACACGCAAATGTT
gaattcagaagttgatgatttcaaagttttaatgcattgcaaattgcaattgcagGTAGATAAGGGTACTAGGAGCGTTATCTGCCGCTTGACACGCAAATGTTTCAGCATATGATTGTCCTTTTTTTCTTACAACAATGAAGCCTTAAGTCGCA
ttttaat putative branch site (score: 3)
atttcaaagttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagccgaaatctatctccttatagatggtttattgttgtttatgaattcagaagttgatgatttcaaagttttaatgcattgcaaattgcaattgcagGTAGATAAGGGTACTAGGAGCGTTATCTGCCGCTTGACACGCAAATGTTTCAGCATATGATTGTCCTTTTTTTCTTACAACAATGAAGCCTTAAGTCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
caaagcc
- - - - - - -tatctcc
- - - - - - - - - - - - - - ggtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaagt