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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattgttgtctcagtttccttcttatgcctgagtcagttgtatttttacgtgtttttattataatcggatgaattccagGTGCATGCTTCACAATTTTGGAGGCAACATTGAAATGTATGGTGCTCTTGATTCAATTTCTTCAGGACCAGTTGATGCTCGTGTTAGCAAAAATTCAACC

Basic information

species Arabidopsis thaliana
transcript AT5G13690.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13690.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G033592_T01 (Zea mays), 3'ss of exon 12
--------------------------------------------------gtatatt-gttgtctcagtttccttcttatgcctgagt-cagttgt--atttttacgtgtttttatt-ataatcggatgaattccagGTGCATGCTTCACAATTTTGGAGGCAACATTGAAATGTATGGTGCTCTTGATTCAATTTCTTCAGGACCAGTTGATGCTCGTGTTAGCAAAAATTCAACC
                                                   ||| || ||  ||||| | |   | | |    ||| |  | ||    ||||| |    | |||| | |||         | || ||||||||| | ||||| ||||| || |||||||||||||||||    |||||||||||||| || || ||  ||||||| |||   ||  | |||||||| 
gtatgtcatcttttaacaaccgctccctaccatcctgtaattccagaccattatttttgtattctcattgttactttaaaatatgaatataattcctgattttcaaccatatttactgatagatttgctcaatctagGTGCATGTTACACAACTTTGGTGGGAACATTGAAATGTATGGCATACTTGATTCAATTTCATCTGGCCCCATTGATGCCCGTACAAGTTACAATTCAACA

upper sequence: AT5G13690.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
-------gtatattgttgtctca-gtttccttcttatgcctgagtcagttgtatttttacgtgtt-tttattat-aatcggatgaattccagGTGCATGCTTCACAATTTTGGAGGCAACATTGAAATGTATGGTGCTCTTGATTCAATTTCTTCAGGACCAGTTGATGCTCGTGTTAGCAAAAATTCAACC
         |  |||||  |||  ||| |    || |              |||| | | |  || |  ||| | ||||  |     | |||||||||||| || || ||||| ||||| ||||||||||||||  |||| ||||||||||||||||| || |||||||||||||| ||   ||| ||||| 
gtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcctgagtcagttgtatttttacgtgtttttattataatcggatgaattccagGTGCATGCTTCACAATTTTGGAGGCAACATTGAAATGTATGGTGCTCTTGATTCAATTTCTTCAGGACCAGTTGATGCTCGTGTTAGCAAAAATTCAACC
             ttgtatttttacgtgt  TA-rich tract