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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttattctcatcctctctggttctggttcatgcgtccctctttcattttctcatggactatacttgttcttttgaagGTTGAAGTTGCCATTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACTACTCGACTGTCTGATATCG

Basic information

species Arabidopsis thaliana
transcript AT5G13260.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125269175|gb|EL283260.1|EL283260
EST:     CTAAAGGAGCTAACTTCTTTAAAG                         GTTGAAGTTGCCATTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACT
genomic: CTAAAGGAGCTAACTTCTTTAAAGgtttattctc ... tcttttgaagGTTGAAGTTGCCATTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggttcatgcgtccctctttcattttctcatggactatacttgttcttttgaagGTTGAAGTTGCCATTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACTACTCGACTGTCTGATATCG
                                        cttgttctttt  CT-rich tract
                  tttcatttt  TA-rich tract