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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgacaatcaaaaagagcaggatctagtttctgatgaaggttattataaaaagtggtctggatcaggagagatacataattctgaaactctcatctttctttttccagGTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAAGGATCTTGAAAGTCTTGAATCAGCCTCGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G07740.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125233496|gb|EL247581.1|EL247581
EST:     CAGCAAGATGACTCTCATGCATTATCTTTGCAAG                         GTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAAGGATCTTGAA
genomic: CAGCAAGATGACTCTCATGCATTATCTTTGCAAGgtaaatgaca ... ctttttccagGTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAAGGATCTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtctggatcaggagagatacataattctgaaactctcatctttctttttccagGTCCTTGCTTCAAAGGCATCAGTTCTACTGGACTTCCCCAAGGATCTTGAAAGTCTTGAATCAGCCTCGAAG
                                  ctctcatctttctttt  CT-rich tract
                  atacataatt  TA-rich tract