Sequence
atgc intronic sequence ATGC exonic sequencegttttattttcttgctccattttccatgatttgaaccccaatcctaattcctctagcctgacatatttgctttcgtgtcttttcagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G06600.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 3'ss of exon 12
-------------------------------gttttattttcttgctccatt-ttccatgatttgaaccccaatcctaattcctctagc--ctgacatatttgctttcgtgtcttttcagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG---
|| ||| || | | || || | || | | | || || | | || | | ||| || | ||| | || || | || |||||||||||||| | | || || |||||||||||||| |||||||| ||||||||||| ||||| || || || ||||| |
gtcgtttttactattaataactgttcattaagtgcaattcactgatttagtggttgcagcaatttccctcatcttgtatttatgtcatcatcttatttgtttctcttttggatggaacagTTGCCTCAAATAAACCCTGGTTTCAATAACA---CCCCATTTAAATTCACAAAGTATTCGAATGCCTACATGCTTGTCTATATTCGTGAGAGCGACAAGGATA
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 3'ss of exon 8
----gttttattttcttgctccattttccatgat--------ttgaacccca-atcctaattcctctagcctgacatatttgctttcgtgt---cttttcagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG---
||| || | | | || || ||||| |||||| || || | || || | ||| | || | | || ||| | || || | |||||||||||||| || |||| || |||||||||||||| || ||||| ||||||||||| || ||||| || ||||| || |
gtgtgttctacctgataattg-atattgaatgatatgagatattgaactacatatgtttgttttcctgtttccgtaattttaatctcttttgggctgaacagTTGCCTCAAATAAATCCTGGTTTCAACAACG---CTCCATTTAAATTCACAAAGTATTCAAATGCCTACATGCTTGTCTACATCCGTGAGAGTGATAAGGACA
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G303655_T01 (Zea mays), 3'ss of exon 2
gttttattttcttgctccattttccatgatttgaaccccaatcctaattcctctagcctgacatat-ttgctttcgtgtctttt-cagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG---
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gtaacattctttatgacaaatgttcattcaatacaatacttgcggacttgtattaactttcctcttatttcttctttgtatggaacagTTGCCTCAAATAAACCCTGGTTTCAATAACA---CGCCATTTAAATTCACAAAGTATTCGAATGCCTACATGCTTGTCTATATACGTGAGAGTGACAAAGAGA
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G071441_T02 (Zea mays), 3'ss of exon 8
gttttattttcttgctccattttccatgatttgaaccccaatcctaattcctctagcctga-catatttgctttcgtgtcttttcagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG---
| | |||| || | || | | ||| |||| || | || ||| | || ||||| || || || || ||||| || ||| | | || | | ||| || ||| | || ||||||||||||||||| || || ||||||||||||||||
------------------gtaatacatg---cagacactaaacttc-ttcaattagcttgggtacataacatttatctttgttgcagCTCCCGCATACCAACCCTGGGTTGGATACTG---CACCGCTTAGATTTACCAAGCATTCAAATGCTTACATGCTTGTTTACATTCGAGAAAGTGACAAAGATA
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G014805_T01 (Zea mays), 3'ss of exon 12
---------gttttattttcttgctccatt---ttccatgatttgaaccccaatcctaattcctctagcctgacatatttgctttcgtgtctttt---cagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG---
|| || | || || | | | | |||| | | |||| | | | || | | | | | | | ||| | || || | || |||||||||||||| | | || ||||||||||||||||| || ||||| ||||||||||| ||||| || || | |||||| |
gtaaaattctttataacaattcattcaatacaatacagttacttgaggacttgtataaattttccacttattgcttaactcttattctttgtatggaacagTTGCCTCAAATAAACCCTGGTTTCAATAACA---CACCATTCAAATTCACAAAGTATTCAAATGCCTACATGCTTGTCTATATACGTGAGAATGACAAGGATA
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 3'ss of exon 12
gttttattttcttgctccattttccatgatttg--aaccccaatcctaattcctctagc-ctgacatatttgctttcgtgtctttt-------cagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG---
|| | || | |||| | | | ||| | || | | | | |||| | || | ||| | || ||| | |||||||| || ||||| ||||| || | |||| || |||||||| || ||||| ||||| ||||||||||| ||||| || ||||||||||| |
---gcatgtctttaccagtgtttctttactccgtcaactttattcttgggtaattgtgtactgatctggttaccttctcctgcttgtatgaaacagTTGCCACAGACAAACCCTGGATTCAACAACA---CTCCATTTAAATTCACGAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGA
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: EFJ13603 (Selaginella moellendorffii), 3'ss of exon 11
gttttattttcttgctccattttccatgatttgaaccccaatcctaattcctctagcctgacatatttgctttcgtgtcttttcagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG---
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--------------------------------gtaagcatgtc---attaaactagtttcggtgacttattgt--ttttcttacagTTGCCACAGACCAATCCCGGATT---TAACAACCCTCCTTTCAAATTTACGAAGTACTCCAATGCATACATGCTTGTATATATCAGAGAGAGCGATAAGGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125135656|gb|EL175858.1|EL175858EST: AGCAATATGGTGGTGAAGAAGAG CTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACA
genomic: AGCAATATGGTGGTGAAGAAGAGgttttatttt ... gtcttttcagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaccccaatcctaattcctctagcctgacatatttgctttcgtgtcttttcagCTACCACAGACTAATCCTGGTTTCAATAATAACCCTCCTTTCAAATTCACAAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAG
ctttcgtgtcttttc CT-rich tract
acatattt TA-rich tract