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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattttgaaagttgtttcactttagtttgtgtgtaagtgtaaggcgttggttctagttttatgtaatagctggtgtaccaattttcgttgtgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G38510.4
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 11
-----------------------------------------------------aatt--ttgaaagttgtttcactttagt-ttgtg---tgtaagtgtaaggcgttggttctagttttatgtaatagctggtgtaccaat-tttcgttgtgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
                                                     || |   ||     |  | ||| | | | || ||     | | |||||     | | |||   | ||| |  |      |    |||| |||  ||||   |  ||||| ||||| || |||||||||||||||||||| |||||  | ||||||
gtactttcttttctgttcttttattgagtagcaaagattttcttggtaagagtaactggctgcttcatactccacctcaatattatgacacatgaatgtaacttaatagatct---tctatattttttactctacctcaatattttcttgttactttcagATATACCCACCCATCAATGTCTTGCCATCTCTCTCTCGATTGATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164002695|gb|ES062375.1|ES062375
EST:     ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAG                         ATCTACCCTCCGATCAA
genomic: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctt ... tgtttcacagATCTACCCTCCGATCAA
EST: gi|116450403|gb|EG492995.1|EG492995
EST:     ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAG                         ATCTACCCTCCGATCAATGTCCTGCCATCTTTGTCCCGTCTCATGAAG
genomic: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctt ... tgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
EST: gi|116450411|gb|EG493003.1|EG493003
EST:     ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAG                         ATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
genomic: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctt ... tgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
EST: gi|116476764|gb|EG519356.1|EG519356
EST:     ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAG                         ATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
genomic: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctt ... tgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggttctagttttatgtaatagctggtgtaccaattttcgttgtgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
        tagttttatgtaata  TA-rich tract