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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacatagtttcccttttccatataagtatctcatttttaaaaaaatacataaaacttatattctatatattctacccgaaaatgcagATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCAAACTGAGTGATCCATGTAAGCGAGTCTGATTGTATCACCATCATTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G34640.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164012955|gb|ES136870.1|ES136870
EST:     AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT                         ATTATAATGGTTGTGATTCTAC
genomic: AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTTgtaagttaca ... gaaaatgcagATTATAATGGTTGTGATTCTAC
EST: gi|86078637|gb|DR374394.1|DR374394
EST:     AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT                         ATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCA
genomic: AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTTgtaagttaca ... gaaaatgcagATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCA
EST: gi|124827750|gb|EH912616.1|EH912616
EST:     AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTT                         ATTATAATGGTTGTGATTCTA
genomic: AAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTTgtaagttaca ... gaaaatgcagATTATAATGGTTGTGATTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttaaaaaaatacataaaacttatattctatatattctacccgaaaatgcagATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCAAACTGAGTGATCCATGTAAGCGAGTCTGATTGTATCACCATCATTCAAG
     taaaaaaatacataaa  TA-rich tract