Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacgaaatttatgtaaaaagactgttttcagtggttggagtttatattctaagagttgaaatctggtgaacagGTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G32630.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116405912|gb|EG448504.1|EG448504
EST:     AACCGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTG                         GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
genomic: AACCGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTGgtgagacgaa ... tggtgaacagGTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
EST: gi|116405919|gb|EG448511.1|EG448511
EST:     AACCGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTG                         GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
genomic: AACCGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTGgtgagacgaa ... tggtgaacagGTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
EST: gi|116405914|gb|EG448506.1|EG448506
EST:     AACCGCTTTATCCCCAAACTTTCCAGCTCTTGCATCCCATCTTTCCCCTG                         GTGCACTAGTGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
genomic: AACCGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTGgtgagacgaa ... tggtgaacagGTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
EST: gi|116405910|gb|EG448502.1|EG448502
EST:     AACCGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTG                         GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
genomic: AACCGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTGgtgagacgaa ... tggtgaacagGTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agactgttttcagtggttggagtttatattctaagagttgaaatctggtgaacagGTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG
                    agtttatattctaa  TA-rich tract