Sequence
atgc intronic sequence ATGC exonic sequencegtaagattatctttataacgcaatattttgattggttgtgcatttttcgttgagatttggaaccaaacttgtcatcctttgtatgtgcttctagTTGTTTCACGACAGAGATTCTGGAGGGATTTGATGTGCTGAGGACACACGGGCTGGGTGAGACGCTAAGAAAATACGGCTACCTCACGAAATCAATATAT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G30870.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G30870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA11G20970.1 (Glycine max), 3'ss of exon 12
gtaagattatctttataacgcaatattttgattggttgtgcatttttcgttgagatttggaac--caaacttgtc------atcctttgtatgtgcttcta--gTTGTTTCACGACAGAGATTCTGGAGGGATTTGATGTGCTGAGGACACACGGGCTGGGTGAGACGCTAAGAAAATACGGCTACCTCACGAAATCAATATAT
|| || | | ||||| |||| ||| || | || | | | | ||| || | || | || | ||| || ||||||| || || ||||||||||||||||||||||| | ||| ||| || | ||||| || ||||| || || || || || || || |||| | |
---gatttttcgtgagtgaagtttatttaaattgtttgcctatatatc-taaaaactcaaaacattaaccccgtttacgatgtttttaatcccaacttgtacagTTGTTTTACAACTGAGATTCTGGAGGGATTTGATGTTCAGAGAACAAGTGGCTTAGGTGATACTCTAAGGAAGTATGGTTATCTTACCCAAGCAATTTCT
upper sequence: AT4G30870.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv13s0019g01290.t01 (Vitis vinifera), 3'ss of exon 12
gtaagattatctt-tataacgcaat--attttgattggt-tgtgcatttttcgttgagatttggaaccaaacttgtcatcct-ttgtatgt-gcttctagTTGTTTCACGACAGAGATTCTGGAGGGATTTGATGTGCTGAGGACACACGGGCTGGGTGAGACGCTAAGAAAATACGGCTACCTCACGAAATCAATATAT
| | || || | | | | | | | | | | | ||| | || | || | | | | | | | || | | | | | |||||||||||||||||||| | |||||||||||||||| ||| ||| || | | ||| ||| | || || || || || || || || |||||
gcacttttgcattgtctggcctagttagtgcaggctattatatttattctgtattacaaattctttcttatcctattgtaatattatgttttgtgtgcagTTGTTTCACGACAGAGATCTTAGAGGGATTTGATGTGCAGAGAACAAGTGGCTTAGCTGATACGTTGAGGAAGTATGGTTATCTTACTCAAGCAATAGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatttttcgttgagatttggaaccaaacttgtcatcctttgtatgtgcttctagTTGTTTCACGACAGAGATTCTGGAGGGATTTGATGTGCTGAGGACACACGGGCTGGGTGAGACGCTAAGAAAATACGGCTACCTCACGAAATCAATATAT
tgcttct CT-rich tract
tttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattatctttataacgcaatattttgattggttgtgcatttttcgttgagatttggaaccaaacttgtcatcctttgtatgtgcttctagTTGTTTCACGACAGAGATTCTGGAGGGATTTGATGTGCTGAGGACACACGGGCTGGGTGAGACGCTAAGAAAATACGGCTACCTCACGAAATCAATATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA