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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttgttttgtattcatgtaaactacacatgaaacaatatatctaataaagtgaacactaagttttcagttcggtttcagtttggcttgaatatttcaagtctcgttcccattgctaagttgtttttgactaccactaatctctttcttcatcgttttgcctacacgcagATGCTACCAGAGAAATACAACTACCACCGAAGATTTAATCGGGATGTAAGCCGCACCACTGATTGTGTTATCTGCATGACCGCTATTGATCTCAGACAGC

Basic information

species Arabidopsis thaliana
transcript AT4G28370.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878061|gb|AU238892.1|AU238892
EST:     TTCTTCTTCTTCAGCATTATTTTGGTTCACGCTGCTTTGTTCCCCGTCAG                         ATGCTACCAGAGAAATACAACTACCACCGAAGATTTAATCGGGATGTAAGC
genomic: TTCTTCTTCTTCAGCATTATTTTGGTTCACGCTGCTTTGTTCCCCGTCAGgttagtttgt ... ctacacgcagATGCTACCAGAGAAATACAACTACCACCGAAGATTTAATCGGGATGTAAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttgtttttgactaccactaatctctttcttcatcgttttgcctacacgcagATGCTACCAGAGAAATACAACTACCACCGAAGATTTAATCGGGATGTAAGCCGCACCACTGATTGTGTTATCTGCATGACCGCTATTGATCTCAGACAGC
                  cactaat  putative branch site (score: 2)
                        tctctttcttcatcgt  CT-rich tract
     tgttttt  TA-rich tract