Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcctttctttacaactacttcaaacacttaccacaatagtattatataaagtatgtccacctatcaccttctagtgaatcaaattaaaattctccagGACAAGAGTCTATCGAGTGGGTTATTCTTCCTCAACCTTCTATGGGCGGTTGAACCAAGAGTTGTGAACTGGAATCTTGTCACCAAGGGTGAAACAG

Basic information

species Arabidopsis thaliana
transcript AT4G26700.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124807277|gb|EH893681.1|EH893681
EST:     ACAGGAAAGTAAGAACAATGGGACGAAAATTGCAAATCGAGAGTTTCAAG                         GACAAGAGTCTATCGAGTGGGTTATTC
genomic: ACAGGAAAGTAAGAACAATGGGACGAAAATTGCAAATCGAGAGTTTCAAGgttcctttct ... aattctccagGACAAGAGTCTATCGAGTGGGTTATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatataaagtatgtccacctatcaccttctagtgaatcaaattaaaattctccagGACAAGAGTCTATCGAGTGGGTTATTCTTCCTCAACCTTCTATGGGCGGTTGAACCAAGAGTTGTGAACTGGAATCTTGTCACCAAGGGTGAAACAG
                                               ttctcc  CT-rich tract
                                tgaatcaaattaaaat  TA-rich tract