1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagctctgttactttttttttaatacacgtctgtccattcattagcaccagcaggctaaagatttgtattttgctatttcagAACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGAGAATGAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAA
species | Arabidopsis thaliana |
transcript | AT4G24190.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGAC AACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGAGAATEST: gi|125266450|gb|EL280535.1|EL280535
genomic: GAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGACgtaagctctg ... gctatttcagAACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGAGAAT
EST: GAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGAC AACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGEST: gi|124933798|gb|EL010923.1|EL010923
genomic: GAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGACgtaagctctg ... gctatttcagAACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAG
EST: GAGGATGCTGCTAACAGGAACCACTTGGCAAAACTTCTTCGTTTTGAGAC AACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGEST: gi|125255910|gb|EL269995.1|EL269995
genomic: GAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGACgtaagctctg ... gctatttcagAACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAG
EST: GAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGAC AACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGAGAA
genomic: GAGGATGCTGCTAACAGGAACCGCTTGGCAAAACTTCTTCGTTTTGAGACgtaagctctg ... gctatttcagAACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGAGAA
cgtctgtccattcattagcaccagcaggctaaagatttgtattttgctatttcagAACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGAGAATGAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAA
ggctaaa putative branch site (score: 3)
ttttgct putative PPT
taaagatttgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctgttactttttttttaatacacgtctgtccattcattagcaccagcaggctaaagatttgtattttgctatttcagAACAAAGTCCGATGGAAAATTGACTTCCCTGGATCAGTACATTAAGAGAATGAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA