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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattaaactaactacgcatctgcttctacattgcttcatctttgttattctattactgaacccgtaaaccagtattccggttgtgtccgttcagGTTCACACGGATAACCCGGATGGTCTCTTCAGGATCTTGTCATCTTCTTTCCAGGTTCTCAGAGCCTAGAGGTGCTGAACGGTCTTGGTTCGGCTCTTTT

Basic information

species Arabidopsis thaliana
transcript AT4G10030.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10030.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA11G01670.1 (Glycine max), 3'ss of exon 12
----gtaaat-taaactaactacgcatctgcttctacattgcttcatctttgttattctattactgaacc-cgtaaaccagtattccggttgtgtccgttcagGTTCACACGGATAACCCGGATGGTCTCTTCAGGATCTTGTCATCTTCTTTCCAGGTTCTCAGAGCCTAGAGGTGCTGAACGGTCTTGGTTCGGCTCTTTT-----
    ||   |  | | |||| | | |  ||    |  ||||  ||   ||||   ||  |||     |     ||||  || |||    ||||       ||||| || || |||||||||||||| |||||||||||  ||||||| ||||||||  | |   ||| | |||    ||||    |      |  ||||| ||     
tcacgtggttacatattaacgatgaaa-tgaggatgaattgtgtc--ttttggagtttgattgtgacataatttaaaagaggatttactttgtcgatcaacagGTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTCCAATTCCAGGGAGGCAAGAT---CTGAGT--TTACAAATGTGCTCTCTTGTAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19798026|gb|AU229600.1|AU229600
EST:     AAGAAGGCGGTGGTGTAGAAATGCATGTCTTGGAAGATGCCGGTCATTGG                         GTTCACACGGATAACCCGGATGGTCTCTTCAGGATCTTGTCATCTTCTTTC
genomic: AAGAAGGCGGTGGTGTAGAAATGCATGTCTTGGAAGATGCCGGTCATTGGgtaaattaaa ... gtccgttcagGTTCACACGGATAACCCGGATGGTCTCTTCAGGATCTTGTCATCTTCTTTC
EST: gi|86075311|gb|DR371068.1|DR371068
EST:     AAGAAGGCGGTGGTGTAGAAATGCATGTCTTGGAAGATGCCGGTCATTGG                         GTTCACACGGATAACCCGGATGGTCTCTTCAGGATCTTGTCATCTTCTTTC
genomic: AAGAAGGCGGTGGTGTAGAAATGCATGTCTTGGAAGATGCCGGTCATTGGgtaaattaaa ... gtccgttcagGTTCACACGGATAACCCGGATGGTCTCTTCAGGATCTTGTCATCTTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgttattctattactgaacccgtaaaccagtattccggttgtgtccgttcagGTTCACACGGATAACCCGGATGGTCTCTTCAGGATCTTGTCATCTTCTTTCCAGGTTCTCAGAGCCTAGAGGTGCTGAACGGTCTTGGTTCGGCTCTTTT
                                              tccgttc  CT-rich tract
     ttattctatta  TA-rich tract