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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatttctccaagaatgttctgacttttgttgaatgctttcactgttagcattgttttgatcgaattttaattgtagGTCTCAATGTTGGAGATATATAATGAGTCCATCAGAGACTTGTTGTCTACAAGCCGAACGATTGCTATAGAATCTGTGCGGGCAGACAGTAGCACATCTG

Basic information

species Arabidopsis thaliana
transcript AT4G05190.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125077465|gb|EL140246.1|EL140246
EST:     CTAAAACCAGCCAAAGTCTTAGTACACAAGGCTGGAAATACAAGATGCAG                         GTCTCAATGTTGGAGATATATAA
genomic: C-AAAACCAGCCAAAGTCTTAGTACACAAGGCTGGAAATACAAGATGCAGgtaaatattt ... ttaattgtagGTCTCAATGTTGGAGATATATAA
EST: gi|86072782|gb|DR368539.1|DR368539
EST:     TCAAAACCAGCCAAAGTCTTAGTACACAAGGCTGGAAATACAAGATGCAG                         GTCTCAATGTTGGAGATATATAATGAGTCCATCAGAGACTTGTTGTCTACA
genomic: TCAAAACCAGCCAAAGTCTTAGTACACAAGGCTGGAAATACAAGATGCAGgtaaatattt ... ttaattgtagGTCTCAATGTTGGAGATATATAATGAGTCCATCAGAGACTTGTTGTCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttgttgaatgctttcactgttagcattgttttgatcgaattttaattgtagGTCTCAATGTTGGAGATATATAATGAGTCCATCAGAGACTTGTTGTCTACAAGCCGAACGATTGCTATAGAATCTGTGCGGGCAGACAGTAGCACATCTG
                                         aattttaattgta  TA-rich tract