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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtacatatattatcttttaccttagcttcatccttacaaaaactgtgaagttatcattagccgactttgtttagatttcacaatcatatgtgaagagtagaaattgcagcagaatacaagaaatgttttgacggattgggtctacatttggttctgtcacattgatttgttgccattgtatgtgactattcagAACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATTGCCAGGGAACGGGAAGTAGCTCTTAGGATCATTTATAGCGTGTCCAAAT

Basic information

species Arabidopsis thaliana
transcript AT4G00720.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124777525|gb|EH867468.1|EH867468
EST:     ACTTCACTGCCCAAG                         AACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATT
genomic: ACTTCACTGCCCAAGgtcagtacat ... gactattcagAACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATT
EST: gi|125091568|gb|EL149391.1|EL149391
EST:     TTTAACTTCACTGCCCAAG                         AACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATT
genomic: TTTAACTTCACTGCCCAAGgtcagtacat ... gactattcagAACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATT
EST: gi|124764343|gb|EH854473.1|EH854473
EST:     ACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAG                         AACTTGCGGGTGCATCAA
genomic: ACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAGgtcagtacat ... gactattcagAACTTGCGGGTGCATCAA
EST: gi|124990896|gb|EL063165.1|EL063165
EST:     ACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAG                         AACTTGCGGGTGCATCAACAGAGCTGCGACNGCGT
genomic: ACTGCCAAATGGAAGAGCACTGCCTCCATTGTTTAACTTCACTGCCCAAGgtcagtacat ... gactattcagAACTTGCGGGTGCATCAACAGAGCTGCGACAGCGT
EST: gi|124973707|gb|EL047315.1|EL047315
EST:     TTTAACTTCACTGCCCAAG                         AACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACTAT
genomic: TTTAACTTCACTGCCCAAGgtcagtacat ... gactattcagAACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCAC-AT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtctacatttggttctgtcacattgatttgttgccattgtatgtgactattcagAACTTGCGGGTGCATCAACAGAGCTGCGACAGCGTCTAATTCCAGCACATTGCCAGGGAACGGGAAGTAGCTCTTAGGATCATTTATAGCGTGTCCAAAT
                     cattgat  putative branch site (score: 4)
                      attgattt  TA-rich tract