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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgactttcttagacaacaaatagtttcaagaagtatgaattttaactgttttacttatatcgttaactggtttcaatcatcaaagGTTCTCAAGGCGATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATG

Basic information

species Arabidopsis thaliana
transcript AT4G00570.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116463393|gb|EG505985.1|EG505985
EST:     CACATGCTCTTCTTGGTTTATCTGGAGTTGGTGGTATCTTTAATGAAGAA                         GTTCTCAAGGCGATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCC
genomic: CACATGTTCTTCTTGGTTTATCTGGAGTTGGTGGTATCTTTAATGAAGAAgtatgtgact ... atcatcaaagGTTCTCAAGGCGATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtatgaattttaactgttttacttatatcgttaactggtttcaatcatcaaagGTTCTCAAGGCGATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATG
       aattttaactgtttta  TA-rich tract