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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaattgggagtcacagaattatcaaactcatagagaaagcagaaaaaacaaactcaaggactcaaattggtgataactgtttcattgcagGTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTAGTTGCTCTCTGGAACCGTTGCTCTGAGCCAGCAACTATTACAGCATCATGGGATATGATCGGTC

Basic information

species Arabidopsis thaliana
transcript AT3G56310.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482858|gb|EG525450.1|EG525450
EST:     GTGTTCAAGGAAGGAAAATTCAAGCCAATGGAGAAAATGATTGTCAGCAG                         GTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTAGTTGCTCTCTGGAAC
genomic: GTGTTCAAGGAAGGAAAATTCAAGCCAATGGAGAAAATGATTGTCAGCAGgtatgaattg ... ttcattgcagGTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTAGTTGCTCTCTGGAAC
EST: gi|86087190|gb|DR382949.1|DR382949
EST:     GTGTTCAAGGAAGGAAAATTCAAGCCAATGGAGAAAATGATTGTCAGCAG                         GTGTGGTCAGGACCTTTATYTGGTGACCGTATGGTAGTTGCTCTCTGGAAC
genomic: GTGTTCAAGGAAGGAAAATTCAAGCCAATGGAGAAAATGATTGTCAGCAGgtatgaattg ... ttcattgcagGTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTAGTTGCTCTCTGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagcagaaaaaacaaactcaaggactcaaattggtgataactgtttcattgcagGTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTAGTTGCTCTCTGGAACCGTTGCTCTGAGCCAGCAACTATTACAGCATCATGGGATATGATCGGTC
                                   tgataac  putative branch site (score: 2)
                                         ctgtttc  CT-rich tract
       aaaaaacaaa  TA-rich tract