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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcccagatctttcagtcaaagattctttttctttgtcctggacccctggtttaccaactttttgccttttacatttctaaaatggcttcatagcttttggtctatgtttcttcttgctcatagGGTCATGAAAACGTAAGGGAGAGGCTTGTGATGGAGCAAGAAGCAGTGACGCAGGAACAGTCATATTTAAAGAGCCAGCTAACTTCATTGAGGACGCAAA

Basic information

species Arabidopsis thaliana
transcript AT3G47460.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164036582|gb|EL972016.1|EL972016
EST:     ATATTAAAACTCTAAAAGCTCGTATTCAGGCATCCTCAAAAGATCTAAAG                         GGTCATGAAAACGTAAGGGAGAGGCTTGTGATGGAGCAAGAAGCAGTGACG
genomic: ATATTAAAACTCTAAAAGCTCGTATTCAGGCATCCTCAAAAGATCTAAAGgtatcccaga ... ttgctcatagGGTCATGAAAACGTAAGGGAGAGGCTTGTGATGGAGCAAGAAGCAGTGACG
EST: gi|164081515|gb|EL988397.1|EL988397
EST:     AAACTACTAAAAGCTCGTATTCAGGCATCCTCAAAAGATCTAAAG                         GGTCATGAAAACGTAAGGGAGAGGCTTGTGATGGAGCAAGAAGCAGTGACG
genomic: AAACT-CTAAAAGCTCGTATTCAGGCATCCTCAAAAGATCTAAAGgtatcccaga ... ttgctcatagGGTCATGAAAACGTAAGGGAGAGGCTTGTGATGGAGCAAGAAGCAGTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatttctaaaatggcttcatagcttttggtctatgtttcttcttgctcatagGGTCATGAAAACGTAAGGGAGAGGCTTGTGATGGAGCAAGAAGCAGTGACGCAGGAACAGTCATATTTAAAGAGCCAGCTAACTTCATTGAGGACGCAAA
      ttctaaa  putative branch site (score: 2)
                                tctatgtttcttctt  putative PPT
     tttctaaaat  TA-rich tract