1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttaaccaaggaaaagggccttaaaccaccacaattctaatattaggcggcaatgcatgtatttcttgtgtgacattctcttgtgcatctgaatgttacagGAGATGAAGCCTGAGGAGAGGAAGAAAACAGTTCCTCGTACTGTCATGATTGGGGGTAAAGCATTTGCCACCTATACAAATGCAAAACGGATAGTGAAGC
species | Arabidopsis thaliana |
transcript | AT3G46970.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGCAGCTGATGAACATTCTTGGAGTAGTATACAGATTCAAGAAACTAAAG GAGATGAAGCCTGAGGAGAGGAAGAAAACAGTTCCTCGTACTGTCATGATTEST: gi|86060245|gb|DR356002.1|DR356002
genomic: GGCAGCTGATGAACATTCTTGGAGTAGTATACAGATTCAAGAAACTAAAGgtatacttgg ... aatgttacagGAGATGAAGCCTGAGGAGAGGAAGAAAACAGTTCCTCGTACTGTCATGATT
EST: CAGCTGATGAACATTCTTGGAGTAGTATACAGATTTCA-GNAAACTAA-G GAGATGAAGCCTGAGGAGA
genomic: CAGCTGATGAACATTCTTGGAGTAGTATACAGATT-CAAG-AAACTAAAGgtatacttgg ... aatgttacagGAGATGAAGCCTGAGGAGA
gcggcaatgcatgtatttcttgtgtgacattctcttgtgcatctgaatgttacagGAGATGAAGCCTGAGGAGAGGAAGAAAACAGTTCCTCGTACTGTCATGATTGGGGGTAAAGCATTTGCCACCTATACAAATGCAAAACGGATAGTGAAGC
atgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaccaaggaaaagggccttaaaccaccacaattctaatattaggcggcaatgcatgtatttcttgtgtgacattctcttgtgcatctgaatgttacagGAGATGAAGCCTGAGGAGAGGAAGAAAACAGTTCCTCGTACTGTCATGATTGGGGGTAAAGCATTTGCCACCTATACAAATGCAAAACGGATAGTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- aaccaag
- - - - -gaaaagg
- - - - - - - - - - -aaaccac
- - - - - - - - - - - - - - cacaatt
- - - - - - - - - - - - - - - - - - - - - - - - -caatgca