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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtttttcatgaaccagaaattgtctgcttaaatgcatgcagcctccggagtcaaattaactaatcataaatttttcttcattctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTACCGTCCAACGCTTTCTGCGGCGTCTATAACTCCAGAAAAGCCTCTCAATT

Basic information

species Arabidopsis thaliana
transcript AT3G44200.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86062641|gb|DR358398.1|DR358398
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCC
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCC
EST: gi|86062640|gb|DR358397.1|DR358397
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC
EST: gi|86062638|gb|DR358395.1|DR358395
EST:     AAGCACTCATCAAGGGAA----A-GGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTAT
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTAT
EST: gi|86062636|gb|DR358393.1|DR358393
EST:     GCACTCATTCAAGGGAATGGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATAT
genomic: GCACTCAT-CAAGGGAATG-TTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATAT
EST: gi|86062639|gb|DR358396.1|DR358396
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGA
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGA
EST: gi|86062637|gb|DR358394.1|DR358394
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcctccggagtcaaattaactaatcataaatttttcttcattctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTACCGTCCAACGCTTTCTGCGGCGTCTATAACTCCAGAAAAGCCTCTCAATT
                    aactaat  putative branch site (score: 2)
                                 tttttcttcattctct  putative PPT
               aaattaactaatcata  TA-rich tract