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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattattctgaaaagaggccacacttttcctttgcatctctaatgctttgaactaagctagtgaagtcattagttacctgatttcagttttgggttacttttctgcagGAAATATTTTTGAAGGAGGACCATCCTCTAGCTTACAATCTATCGTTTTCTACCAGCTTAGGTCTATTGCCCGCAACACTGTCCCTGAAAACTACTGGAT

Basic information

species Arabidopsis thaliana
transcript AT3G27325.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27325.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: LOC_Os09g09360.1 (Oryza sativa), 3'ss of exon 10
gttattattctgaaaagaggccacacttttcctttgcatctctaa-tgctttgaactaagctagtgaagtcattagttacctgatttcagttttgggttacttttctgc-agGAAATATTTTTGAAGGAGGACCATCCTCTAGCTTACAATCTATCGTTTTCTACCAGCTTAGGTCTATTGCCCGCAACACTGTCCCTGAAAACTACTGGAT
                        | ||     |||| |  | || |      ||  | | | || |    || |  |   ||  || |   ||   ||  |||| |   ||||||||||||||||||||||||| || || ||||  ||  | |||||||||   ||| | |||||  | || |  | | | ||  ||| |||| ||||||
----------------------gtaattaattcttgcttaccaaaatatggataatgatgtttgtaactgtatgatatggatgtgttgaaacttaatttttttttatcttagGAAATATTTTTGAAGGAGGACCACCCACTGGCTTTAAACTTGTCGTTTTCTGTGAGCCTTGGTCTTCTACCAGTTATATTATCTTTGAGAACTGCTGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagctagtgaagtcattagttacctgatttcagttttgggttacttttctgcagGAAATATTTTTGAAGGAGGACCATCCTCTAGCTTACAATCTATCGTTTTCTACCAGCTTAGGTCTATTGCCCGCAACACTGTCCCTGAAAACTACTGGAT
                      acctgat  putative branch site (score: 4)
                                         ttacttttct  putative PPT
               attagtta  TA-rich tract