Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaagatattcaacctgagaatctgtttcttcttaaagcttcttttaaaacttaaaacaagaattcaaagtgtcaatgtttggatctttgttaaacagGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAA

Basic information

species Arabidopsis thaliana
transcript AT3G24430.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24430.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA07G09820.1 (Glycine max), 3'ss of exon 13
gtatgaaagatattcaacc-tgagaatctgtttcttcttaaagcttct---tttaaaacttaaaacaagaattcaaagtgtcaatgtttggatctttgttaaacagGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAA
 |||  | |  ||| ||   |   |||   | ||| | |  | | | |   | | | | | ||   | | || ||     |||   |||     | | | ||||||||||||||||| || ||||| ||| | |  || || |||||  | |||||||| |||||||| || || |||||||||||||| || || || || ||||
-tattgatgtaattaaataattgaaattcatgtctgcatggatcctttgcatgttatattcaatttaggtatccatctcatcaggcttt-----tatttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACGGTGATGTTCCTGAAGATATTGAACCTGAAGAAATTCGACCAATGGGAAATTATGCAGTTTCAATAA

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 3'ss of exon 12
----gtatgaaagatatt-caacctgagaatctgtttcttcttaaagcttcttttaaaacttaaaacaagaattcaaagtgtcaatgtttggatctttgttaaacagGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAA
     | |||    | ||  || ||   || ||    |||  | |   | ||||      | || | | ||||    | ||||    |||   ||||| | |||||||||||||||||||||||||||||| | |  ||||  |||||  |||||||||| || ||||| || || || ||||||||||| || ||||| || ||||
aactctttgatttttgttgtaagcttgaaacctcccactttctgactatactttctcc-ttgaacatatgaat---gattgtctcctttt---tctttctgaaacagGATGAATGGACTGGAGAGCAAAAACTACAGTATGCTGATGTTCCGGAAGATATTGAGCCTGAAGAAATTCGGCCAATGGGAAATTATGCTGTATCAATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124766751|gb|EH856881.1|EH856881
EST:     ATAGATCTGCACAAAGTGTG                         GANGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGAT
genomic: ATAGATCTGCACAAAGTGTGgtatgaaaga ... tgttaaacagGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGAT
EST: gi|86085783|gb|DR381542.1|DR381542
EST:     TACTGCACCCTGCAACCGTCAGAAGAAATGATAGATCTGCACAAAGTGTG                         GATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGAT
genomic: TACTGCACCCTGCAACCGTCAGAAGAAATGATAGATCTGCACAAAGTGTGgtatgaaaga ... tgttaaacagGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGAT
EST: gi|125272017|gb|EL286102.1|EL286102
EST:     ATCTGCACAAAGTGTG                         GATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGAT
genomic: ATCTGCACAAAGTGTGgtatgaaaga ... tgttaaacagGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaaacttaaaacaagaattcaaagtgtcaatgtttggatctttgttaaacagGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAA
                                         tctttgtt  CT-rich tract
        ttaaaacaagaatt  TA-rich tract