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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttctatcaaacagtttagatttggtgaggtcatttctatgattgatgcttaaagccttattcgtctttggtttgcagGAATTGGGAAGCGATCACTTGGCTCTTGTTTCTGAATTTGTCTTTGAACCGGACGGTTAAAGGCATCTAGTGCCAGCTTAGTTTTCTTTGAACCGAACCG

Basic information

species Arabidopsis thaliana
transcript AT3G18500.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18500.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv17s0000g04030.t01 (Vitis vinifera), 3'ss of exon 12
---------------------gtatgtctttctatcaaacagtttagatttggtgaggtcatttctatgattgatgcttaaagccttattcgtctttggtttgcagGAATTGGGAAGCGATCACTTGGCTCTTGTTTCTGAATTTGTCTTTGAACCGG--ACGGTTAAAGGCATCTA-GTGCCAGCTTAGTTTTCTTTGAACCGAACCG
                       |||| |||| || ||  | |    || |||||    ||| | ||||  | ||| ||||     | |||  | ||  | |||||||| ||||||| ||||||||||||||  ||||||| |||| ||| | ||  |  || |   |||| | | |  || || ||  | |  | |   |   |    
tactactctataggtgccttttaatgtgtttccataaatgattaacaatgtggtg----catgtatatgtat-atgattaacaatgttttc-ccattattatgcagGAAGTGGGAAGTGATCACTTGGCTCTGATTTCTGAGTTTGCCTTCGCACAAGGCACAGAAGAAGGAAACAATATGACATCTATGGTAACCTAAGATGTAG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgaggtcatttctatgattgatgcttaaagccttattcgtctttggtttgcagGAATTGGGAAGCGATCACTTGGCTCTTGTTTCTGAATTTGTCTTTGAACCGGACGGTTAAAGGCATCTAGTGCCAGCTTAGTTTTCTTTGAACCGAACCG
                 gattgat  putative branch site (score: 4)
                                ccttattcgtcttt  putative PPT
         atttctat  TA-rich tract