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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaatacctatacaaccttatatcttgattgcttgtggtatttctagattacctcgaccatatatctctctgttttgtactataagccaagaattccgaagttttgttaattgtataaatttgacagGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGG

Basic information

species Arabidopsis thaliana
transcript AT3G13930.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13930.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA07G03930.2 (Glycine max), 3'ss of exon 11
gcaaatacctatacaaccttatatcttgattgcttgtggtatttctagattacctcgaccatatatctctctgttttgt---actataagccaagaattccgaagttttgttaattgtataaatttg-acagGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGG
                          | |      ||| | ||| |  |  |     || ||| || | | | | ||||   |  || ||  | |  ||   ||        || | || | ||||  |||||||||||| |||||  |   ||| ||||| |||||||||||||| ||||| || || || |||||||||||||||||| | | | |
-------------------------gtaagaatgagtgatgtttttgaaacaa---aactatacatatttttatcttgtgtaagcatgagagatgttttttaaa----caaaaactatacatatttttacagGTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG

upper sequence: AT3G13930.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv11s0016g01870.t01 (Vitis vinifera), 3'ss of exon 11
gcaaatacctatacaaccttatatcttgattgcttgtggtatttct-agattacctcgaccatatatctctctgttttgtactataagccaagaattccgaagttttgttaattgtataaatttgacagGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGG
                                   ||  ||| | | | |||| |   |  |  |   |   ||  ||| |  | |    ||  || | ||  | | | || ||  | |   |   |||||||| || ||||| |||    | |||||||||||||||||||| || || || |||||||| || |||||||||||  |||||| 
-----------------------------------gtaatatgtttgaaattatccaaatta-gtggatggttgcattg-atca-agcttaatgatactgatatctggata-ttcaaaaccctcttcagGTCACTGCTTCACGCTTGCTGCTATCAAAGCAAACTATTCCTCATTATTATTTAACCGTGGACACTTGTGTTGACAAGCTGATGGA

upper sequence: AT3G13930.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 3'ss of exon 12
---------------------------------------------------------gcaaatac---ctatacaaccttatatctt--gattgcttgtggtatttctagattac-ctcgaccatatatctctctgttttgtactata----agccaagaattccgaagttttgttaattgtataaatttgacagGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGG
                                                           |||| |   ||||  | || | | ||||  | ||| |||     ||||     ||  ||  | | |   | |   |  | | ||  | |    |||      ||| |||||    ||  | |||| |  ||||||| ||||||| |||||  |   ||| || ||||| |||||||| || || || ||||| ||||||||||||||||||||| | |||| 
gtaatacttattccgaactcttgttctagcatcttttggggttccaatgcatattatagaaatccattctatttagccatgtttcttctgtttgtttgcaagctttcagatctatgcttaatctttcctattgttaatatttagcacattgaagcttcatcttctgaagtcaactttttggtattaccttgacagATCACAGCTTCACGCCTATTATTATCGAAGCAGACTATTCCCCATTATTATTTGACAGTGGATACATGTGTTGACAAACTTATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtactataagccaagaattccgaagttttgttaattgtataaatttgacagGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGG
                                tgttaat  putative branch site (score: 3)
                          aagttttgttaattgt  TA-rich tract