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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttctttacctttaagttttccctttattcgttaactttgtttcactgatactcttacctaatcttcatgcctttgttgaagaaagtgatattatcaaccccctaacttttgattgttactctgtagCTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTT

Basic information

species Arabidopsis thaliana
transcript AT3G12980.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12980.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 3'ss of exon 12
--------------------gtaacttctttacctt--taagt----tttccctttattcgttaactttgtttcac----tgatactcttacctaatcttcatgcctttgttgaagaaagtgatattatcaaccccctaacttttgattgttactctgtagCTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTT
                    |     || |||  ||  ||  |    |  |   |    |  || |  | |||| |    |   |  ||| |  | | ||  ||  ||| |      |   |||   |||    || | |  ||   |||||| | || |||| || || | |||    |||||||||||||||||||| ||||||||||||||  |||  ||||  || |||||||| || ||||| |||||||| ||||
gtaggattgtacagtggtttgcgtgctccttattttgatagatcacatggctgctagcactctacccctctttccctttctatcatccttgctcagtatt--tgtttttttcactttactggatggcatctttaccatgaacttgatttgtta-tgtgcagCTTGGGGAAACCATTTATCCAATGAAGGAAGATTTCATTATGGTTCATTTGCAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAAACGTT

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA15G00250.1 (Glycine max), 3'ss of exon 12
gtaacttctttacctttaagttttccctttattcgttaactttgtttcactgatactcttacctaatcttcatgcctttgttgaagaaagtgatattatcaaccccctaacttttgattgttactctgtagCTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTT
                 || || |  |||   ||  | | |   ||| ||    | |  ||     | |     ||||   || | | ||  || |  |         | ||||||||   ||  |   |||| ||||| | |||   |||||||||||||||||| ||||||||||||||||| |||   || |  ||||| |||| ||| ||||| ||||| || ||||
----------------caaattatatcttc--tcacttattgcatttaac----atttatatggggttt-----ccttgagtggaaatagcaatttccttg-taataaagcttttgatctctatcc---agCTTGGTGAAACCATTTGCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCACTCATTGCTGTATTCTAATGGTGTCTGGCAACCGTT

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 14
gtaacttctttacctttaagttttccctttattcgttaactttgtttcactga--tactcttacctaatcttcatgcctttgttgaagaaagtgatattatcaaccccctaacttttgattgttactctgtagCTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTT
                              |  | ||||  |||||||  |    ||||  |  | ||| || ||   || | |     | ||   || ||         || | |||||  ||   ||  |||| ||||| | |||   |||||||||||||||||| || |||||||||||||| |||   ||||     ||||||| | | ||||| ||||| || ||||
------------------------------aaacattaatattgtttccttactttactgctttcaaatatttatctgttaggttccttatgtttgataatttcttataaaattcttgatcttt---ctccagCTTGGTGAAACCATTTCCCCAATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGTACTAGCTGTTGTATTTTAATGGTGTCTGGCAACCGTT

upper sequence: AT3G12980.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 11
gtaacttctttacctttaagttttccctttattcgttaactttgtttcactgatactcttacctaatcttcatgcctttgttgaa--gaaagtga--tattatcaaccccctaacttttgattgttactctgtagCTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTT
                                |    ||| |   |||||||||| | | |  |  || | |  | ||||   ||  |||||| |  |  | |     |         |   | ||  |||  |||| ||||| | |||   |||||||||||||||||| || |||||||| |||||||||   ||||  |||||||||  ||| |||||||||||||| ||||
--------------------------------tttcaaacgtc--ttcactgatattat-attttctcctgacacttttgaacaaatgaaagtcaatttctgtttgttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttgaagaaagtgatattatcaaccccctaacttttgattgttactctgtagCTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTT
                                            ttactct  CT-rich tract
                atattatcaa  TA-rich tract