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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaaataaacccaccagaaaagaatctggggtgtgtacttattgtctttggttattgagcaatatatattcacatttattctttctggatgtttaccatattagGTGGACTATGAAGGGGCAATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGA

Basic information

species Arabidopsis thaliana
transcript AT3G12520.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12520.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 11
gtaagttcaaataaacccaccagaaaagaatctggggtgtgtactt-attgtctt---tggttattgagcaatatatattcacatttattctttctggatgtttaccatattagGTGGACTATGAAGGGGCAATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGA
                |||    | || | |   |  |   | ||| ||  | ||   |||||||   |      |  |   |||| ||||||  |    |  |    | | |||| || ||||| | ||| || ||| |||||||||| || |||| |||||||  |||||||||||| |||||||| || || |||||| |||| || ||||
--------------gtccattgtagaaaatttctgtttagctgctttatcattttggatggttatcttgtttgtcaactaagcattcattcttaattctcgcatgatttttcagGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGA

upper sequence: AT3G12520.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA18G52270.1 (Glycine max), 3'ss of exon 11
gtaagttcaaataaacccaccagaaaagaatctggggtgtgtact-tattgtctttggttattgagcaatatat--attca-catttattctt--tctggatgtttaccatattagGTGGACTATGAAGGGGCAATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGA-
                 ||    | || | |   |  |   | || |||  | || | |  ||     || | |  | | | |||| ||||||  |     || ||    | | |||| || ||||| | ||| || ||| |||||||||| || |||| |||||||  |||||||||||| |||||||| || || |||||| |||| || |||| 
-----------------cattgtagaaaatttctgtttagctgctatatccttttggatggttatcttatttgttaactgagcattcattcttaattcttttgcttgatttttcaggTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttattgagcaatatatattcacatttattctttctggatgtttaccatattagGTGGACTATGAAGGGGCAATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGA
           aatatatattcacatt  TA-rich tract