1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaaaattttctatcttgacagaaactgtaaccgttgtcttgtgttctctcttccgcctgaaaaaagtgtttcctttttgtcacagATTTACACTTCTGCTAGCAATTTGTTTTCCATGTATCATCAATTTGATCGCACTTCACGCAAAGGTCCAAAG
species | Arabidopsis thaliana |
transcript | AT3G10740.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATGGATCCTCTCATCCACTCGACCACCCAGCTGATTACTATGACTATCAC ATTTACACTTCTGCTAGCAAEST: gi|124798952|gb|EH888631.1|EH888631
genomic: ATGGATCCTCTCATCCACTCGACCACCCAGCTGATTACTATGACTATCACgtaaaatttt ... tttgtcacagATTTACACTTCTGCTAGCAA
EST: GGATCCTCTCATCCACTCGACCACCCAGCTGATTACTATGACTATCAC ATTTACACTTCTGCTAGCAATTTGTTTTCCATGTATCATCAATTTGEST: gi|125297388|gb|EL311473.1|EL311473
genomic: GGATCCTCTCATCCACTCGACCACCCAGCTGATTACTATGACTATCACgtaaaatttt ... tttgtcacagATTTACACTTCTGCTAGCAATTTGTTTTCCATGTATCATCAATTTG
EST: ATGGATCCTCTCATCCACTCGACCACCCAGCTGATTACTATGACTATCAC ATTTACACTTCTGCTAGCAATTTGTTTTCCATGTATCAT
genomic: ATGGATCCTCTCATCCACTCGACCACCCAGCTGATTACTATGACTATCACgtaaaatttt ... tttgtcacagATTTACACTTCTGCTAGCAATTTGTTTTCCATGTATCAT
ccgttgtcttgtgttctctcttccgcctgaaaaaagtgtttcctttttgtcacagATTTACACTTCTGCTAGCAATTTGTTTTCCATGTATCATCAATTTGATCGCACTTCACGCAAAGGTCCAAAG
tgtttcctttttgtc CT-rich tract
tgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattttctatcttgacagaaactgtaaccgttgtcttgtgttctctcttccgcctgaaaaaagtgtttcctttttgtcacagATTTACACTTCTGCTAGCAATTTGTTTTCCATGTATCATCAATTTGATCGCACTTCACGCAAAGGTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG