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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcctgaaacctcaatagatgagcaatggcttcttgctgaactaaaccagctgttttcaaatacagACGACGCTGTTGGTTCCAGGCAATTACCAGGGAGAGAGGAGGATAACGCAGAGCCAGATCTATGACCGCCCTGGAAAATACCGGATAAAACTACCAACTG

Basic information

species Arabidopsis thaliana
transcript AT3G09090.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125327081|gb|EL341161.1|EL341161
EST:     CTGGTTCACAAGCACCCTACAACGTTACT                         ACGACGCTGTTGGTTCCAGGCAATTACCAGGGAGAGAGGAGGATAACGCAG
genomic: CTGGTTCACAAGCACCCTACAACGTTACTgtaagttcct ... tcaaatacagACGACGCTGTTGGTTCCAGGCAATTACCAGGGAGAGAGGAGGATAACGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatagatgagcaatggcttcttgctgaactaaaccagctgttttcaaatacagACGACGCTGTTGGTTCCAGGCAATTACCAGGGAGAGAGGAGGATAACGCAGAGCCAGATCTATGACCGCCCTGGAAAATACCGGATAAAACTACCAACTG
                            aactaaa  putative branch site (score: 2)
                                       ctgttttc  putative PPT
                                          ttttcaaata  TA-rich tract